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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS13415 and HGI48_RS13420 overlap by 8 nucleotides
HGI48_RS13420 and HGI48_RS13425 overlap by 1 nucleotides
HGI48_RS13425 and HGI48_RS13430 are separated by 8 nucleotides
HGI48_RS13430 and HGI48_RS13435 are separated by 2 nucleotides
HGI48_RS13415: HGI48_RS13415 - flagellar motor switch protein FliG, at 2,941,814 to 2,942,806
_RS13415
HGI48_RS13420: HGI48_RS13420 - flagellar assembly protein FliH, at 2,942,799 to 2,943,536
_RS13420
HGI48_RS13425: HGI48_RS13425 - flagellum-specific ATP synthase FliI, at 2,943,536 to 2,944,906
_RS13425
HGI48_RS13430: HGI48_RS13430 - flagella biosynthesis chaperone FliJ, at 2,944,915 to 2,945,355
_RS13430
HGI48_RS13435: HGI48_RS13435 - flagellar hook-length control protein FliK, at 2,945,358 to 2,946,689
_RS13435
Group
Condition
HGI48
_RS13415
HGI48
_RS13420
HGI48
_RS13425
HGI48
_RS13430
HGI48
_RS13435
carbon source
M9+sucrose
-0.5
-0.1
-0.6
-0.5
-0.7
plant
Atlantic
-0.1
-0.3
-0.3
-0.7
-0.2
plant
Atlantic
+0.4
+0.6
+0.0
-0.1
-0.1
control
LB
+0.4
+0.2
+0.2
+0.0
+0.3
control
PDB
+0.1
+0.6
+0.1
+0.3
+0.1
plant
Atlantic
+0.3
+0.1
+0.3
+0.4
+0.3
plant
Norland
+0.3
+0.4
+0.4
-0.0
+0.3
plant
Norland
+0.4
+0.4
+0.4
-0.3
+0.5
plant
Norland
+0.4
+0.3
+0.2
+0.2
+0.5
control
LB
+0.3
+0.4
+0.3
+0.3
+0.3
control
LB
+0.5
+0.3
+0.5
+0.0
+0.4
plant
Norland
+0.4
+0.3
+0.3
+0.5
+0.2
plant
Atlantic
+0.4
+0.4
+0.4
+0.2
+0.5
plant
Atlantic
+0.7
+0.4
+0.5
+0.1
+0.2
plant
Upstate
+0.4
+0.6
+0.3
+0.4
+0.2
control
LB
+0.4
+0.5
+0.3
+0.1
+0.4
plant
Norland
+0.6
+0.3
+0.4
+0.3
+0.3
carbon source
M9+glycerol
+0.6
+0.8
+0.7
+0.5
+0.4
plant
Upstate
+0.8
+0.4
+0.6
+0.7
+0.4
plant
Upstate
+0.7
+0.5
+0.7
+0.7
+0.4
plant
Upstate
+0.8
+0.6
+0.7
+0.6
+0.8
plant
Atlantic
+0.8
+0.9
+0.7
+0.6
+0.6
carbon source
M9+glycerol
+1.1
+0.9
+1.0
+0.7
+0.5
carbon source
M9+glycerol
+0.9
+1.0
+1.0
+0.6
+0.8
carbon source
M9+glycerol
+1.0
+0.9
+1.1
+0.8
+0.7
carbon source
M9+glycerol
+1.1
+1.0
+1.0
+0.9
+0.8
carbon source
M9+polygalacturonate
+1.6
+1.3
+1.4
+1.3
+0.6
carbon source
M9+polygalacturonate
+1.8
+1.3
+1.5
+1.1
+0.9
carbon source
M9+polygalacturonate
+1.5
+1.7
+1.4
+1.4
+0.8
carbon source
M9+glycerol
+1.4
+1.6
+1.4
+1.4
+1.1
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