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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS13400 and HGI48_RS13405 are separated by 190 nucleotides
HGI48_RS13405 and HGI48_RS13410 are separated by 332 nucleotides
HGI48_RS13410 and HGI48_RS13415 overlap by 4 nucleotides
HGI48_RS13415 and HGI48_RS13420 overlap by 8 nucleotides
HGI48_RS13400: HGI48_RS13400 - flagellar protein FliT, at 2,938,887 to 2,939,249
_RS13400
HGI48_RS13405: HGI48_RS13405 - flagellar hook-basal body complex protein FliE, at 2,939,440 to 2,939,754
_RS13405
HGI48_RS13410: HGI48_RS13410 - flagellar M-ring protein FliF, at 2,940,087 to 2,941,817
_RS13410
HGI48_RS13415: HGI48_RS13415 - flagellar motor switch protein FliG, at 2,941,814 to 2,942,806
_RS13415
HGI48_RS13420: HGI48_RS13420 - flagellar assembly protein FliH, at 2,942,799 to 2,943,536
_RS13420
Group
Condition
HGI48
_RS13400
HGI48
_RS13405
HGI48
_RS13410
HGI48
_RS13415
HGI48
_RS13420
carbon source
M9+sucrose
+0.2
-1.0
-0.6
-0.5
-0.1
plant
Atlantic
-0.7
-0.4
-0.2
-0.1
-0.3
control
PDB
-0.5
-0.3
-0.0
+0.1
+0.6
plant
Atlantic
-0.9
-0.3
+0.5
+0.4
+0.6
plant
Norland
-0.5
-0.1
+0.4
+0.3
+0.4
plant
Upstate
-0.2
+0.5
+0.2
+0.2
+0.2
plant
Atlantic
-0.6
+0.4
+0.5
+0.4
+0.4
plant
Norland
-0.3
+0.3
+0.3
+0.6
+0.3
control
LB
+0.0
+0.1
+0.4
+0.3
+0.4
control
LB
-0.1
+0.5
+0.4
+0.4
+0.2
plant
Upstate
-0.4
+0.7
+0.1
+0.4
+0.6
plant
Norland
-0.1
+0.6
+0.4
+0.4
+0.3
plant
Norland
+0.2
+0.2
+0.4
+0.4
+0.4
plant
Norland
-0.1
+0.6
+0.5
+0.4
+0.3
control
LB
-0.0
+0.4
+0.4
+0.4
+0.5
plant
Atlantic
-0.4
+0.6
+0.5
+0.7
+0.4
control
LB
+0.2
+0.5
+0.5
+0.5
+0.3
plant
Upstate
+0.0
+0.5
+0.5
+0.7
+0.5
plant
Upstate
+0.2
+0.2
+0.6
+0.8
+0.4
carbon source
M9+glycerol
+0.0
+0.2
+0.7
+0.6
+0.8
plant
Atlantic
+0.0
+0.2
+0.5
+0.8
+0.9
plant
Upstate
+0.3
+0.4
+0.7
+0.8
+0.6
carbon source
M9+glycerol
-0.3
+0.9
+1.0
+0.9
+1.0
carbon source
M9+glycerol
-0.6
+1.0
+1.1
+1.1
+1.0
carbon source
M9+glycerol
-0.3
+1.2
+1.0
+1.0
+0.9
carbon source
M9+glycerol
-0.5
+1.4
+0.9
+1.1
+0.9
carbon source
M9+polygalacturonate
-1.1
+1.6
+1.5
+1.6
+1.3
carbon source
M9+glycerol
-0.4
+1.2
+1.4
+1.4
+1.6
carbon source
M9+polygalacturonate
-1.0
+1.7
+1.4
+1.5
+1.7
carbon source
M9+polygalacturonate
-0.9
+1.9
+1.7
+1.8
+1.3
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