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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS13345 and HGI48_RS13350 are separated by 54 nucleotides
HGI48_RS13350 and HGI48_RS13355 are separated by 378 nucleotides
HGI48_RS13355 and HGI48_RS13360 are separated by 103 nucleotides
HGI48_RS13360 and HGI48_RS13365 are separated by 316 nucleotides
HGI48_RS13345: HGI48_RS13345 - flagella biosynthesis regulatory protein FliZ, at 2,923,472 to 2,923,984
_RS13345
HGI48_RS13350: HGI48_RS13350 - RNA polymerase sigma factor FliA, at 2,924,039 to 2,924,761
_RS13350
HGI48_RS13355: HGI48_RS13355 - hypothetical protein, at 2,925,140 to 2,926,567
_RS13355
HGI48_RS13360: HGI48_RS13360 - FkbM family methyltransferase, at 2,926,671 to 2,927,756
_RS13360
HGI48_RS13365: HGI48_RS13365 - Gfo/Idh/MocA family oxidoreductase, at 2,928,073 to 2,929,206
_RS13365
Group
Condition
HGI48
_RS13345
HGI48
_RS13350
HGI48
_RS13355
HGI48
_RS13360
HGI48
_RS13365
plant
Atlantic
-0.0
-0.1
+0.2
-0.5
-0.5
carbon source
M9+sucrose
+0.2
-0.6
-0.1
+0.0
-0.1
plant
Atlantic
-0.3
+0.1
+0.4
+0.2
-0.3
plant
Atlantic
-0.1
+0.5
-0.0
-0.1
-0.1
carbon source
M9+sucrose
+0.3
-0.2
-0.2
-0.0
+0.2
plant
Norland
+0.3
+0.4
-0.3
-0.1
-0.1
plant
Norland
-0.0
+0.4
-0.1
+0.0
-0.1
plant
Norland
+0.1
+0.4
-0.2
+0.1
-0.2
plant
Norland
+0.2
+0.2
+0.2
-0.1
-0.2
plant
Upstate
-0.2
+0.6
+0.4
-0.1
-0.2
control
PDB
-0.1
+0.3
-0.0
+0.3
+0.0
plant
Atlantic
-0.1
+0.8
-0.0
-0.1
-0.1
plant
Upstate
-0.0
+0.7
+0.1
-0.0
-0.2
control
LB
-0.1
+0.2
+0.1
+0.3
+0.1
plant
Atlantic
-0.0
+0.6
+0.1
+0.1
-0.0
carbon source
M9+glycerol
-0.1
+0.6
+0.3
+0.0
-0.0
control
LB
-0.2
+0.3
+0.2
+0.3
+0.3
plant
Upstate
+0.1
+0.5
+0.2
+0.0
+0.0
plant
Atlantic
-0.2
+0.9
+0.1
+0.1
-0.1
carbon source
M9+sucrose
+0.3
+0.1
-0.0
+0.1
+0.4
carbon source
M9+polygalacturonate
-0.3
+1.5
+0.0
-0.0
-0.2
carbon source
M9+polygalacturonate
-0.0
+1.2
-0.0
-0.1
-0.1
control
PDB
+0.4
+0.3
+0.1
+0.3
+0.1
control
PDB
+0.0
+0.6
+0.1
+0.3
+0.1
carbon source
M9+glycerol
-0.1
+0.7
+0.3
+0.2
+0.0
carbon source
M9+glycerol
-0.0
+0.7
+0.2
+0.1
+0.4
carbon source
M9+glycerol
-0.2
+0.9
+0.2
+0.3
+0.3
carbon source
M9+glycerol
-0.4
+0.9
+0.4
+0.3
+0.2
carbon source
M9+glycerol
-0.1
+0.8
+0.2
+0.4
+0.3
carbon source
M9+polygalacturonate
+0.1
+1.4
+0.1
+0.1
+0.1
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