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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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500 nt
HGI48_RS13110 and HGI48_RS13115 are separated by 35 nucleotides
HGI48_RS13115 and HGI48_RS13120 are separated by 40 nucleotides
HGI48_RS13120 and HGI48_RS13125 overlap by 23 nucleotides
HGI48_RS13125 and HGI48_RS13130 are separated by 21 nucleotides
HGI48_RS13110: HGI48_RS13110 - alpha/beta hydrolase, at 2,873,852 to 2,874,394
_RS13110
HGI48_RS13115: HGI48_RS13115 - beta-N-acetylhexosaminidase, at 2,874,430 to 2,875,455
_RS13115
HGI48_RS13120: HGI48_RS13120 - phosphotransferase, at 2,875,496 to 2,876,350
_RS13120
HGI48_RS13125: HGI48_RS13125 - penicillin-binding protein activator LpoB, at 2,876,328 to 2,876,921
_RS13125
HGI48_RS13130: HGI48_RS13130 - DUF1425 domain-containing protein, at 2,876,943 to 2,877,326
_RS13130
Group
Condition
HGI48
_RS13110
HGI48
_RS13115
HGI48
_RS13120
HGI48
_RS13125
HGI48
_RS13130
plant
Upstate
-0.1
-0.9
-0.5
N.D.
-0.3
plant
Norland
-0.7
-0.2
-0.9
N.D.
+0.3
control
PDB
-0.7
-0.1
-0.4
N.D.
-0.3
plant
Atlantic
-0.1
+0.2
-1.4
N.D.
-0.2
carbon source
M9+glycerol
-0.5
-0.0
-0.6
N.D.
-0.1
carbon source
M9+glycerol
-0.5
+0.2
-1.1
N.D.
+0.1
plant
Atlantic
-0.9
+0.4
-0.4
N.D.
-0.4
plant
Atlantic
-0.1
+0.8
-1.0
N.D.
-0.8
control
PDB
-0.1
-0.5
-0.3
N.D.
-0.2
carbon source
M9+polygalacturonate
-0.1
-0.5
-0.2
N.D.
-0.2
carbon source
M9+glycerol
-0.2
-0.4
-0.6
N.D.
+0.2
control
PDB
-1.0
-0.0
-0.1
N.D.
+0.3
plant
Atlantic
+0.2
-0.7
-0.3
N.D.
-0.0
plant
Norland
+0.1
-0.3
-0.1
N.D.
-0.4
plant
Norland
-0.1
+0.2
-0.3
N.D.
-0.4
carbon source
M9+glycerol
-0.1
-0.5
-0.4
N.D.
+0.4
carbon source
M9+glycerol
-0.2
-0.1
-0.5
N.D.
+0.2
control
LB
-0.6
+0.2
-0.1
N.D.
+0.0
plant
Atlantic
-0.2
-0.4
+0.2
N.D.
+0.0
plant
Norland
-0.2
-0.2
-0.2
N.D.
+0.3
control
LB
-0.1
+0.3
-0.5
N.D.
+0.3
carbon source
M9+glycerol
-0.2
+0.5
-0.5
N.D.
+0.4
carbon source
M9+sucrose
+0.4
-0.4
+0.5
N.D.
+0.2
plant
Upstate
+0.4
-0.1
-0.1
N.D.
+0.5
control
PDB
-0.0
+0.4
+0.3
N.D.
+0.2
carbon source
M9+sucrose
+0.1
+0.3
+0.3
N.D.
+0.2
plant
Atlantic
-0.1
+0.4
+0.6
N.D.
+0.1
carbon source
M9+polygalacturonate
+0.4
+0.4
+0.7
N.D.
+0.1
carbon source
M9+polygalacturonate
+0.4
+0.8
+0.7
N.D.
-0.2
carbon source
M9+sucrose
+0.6
+0.4
+0.8
N.D.
+0.2
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