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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS12920 and HGI48_RS12925 are separated by 317 nucleotides
HGI48_RS12925 and HGI48_RS12930 are separated by 323 nucleotides
HGI48_RS12930 and HGI48_RS12935 are separated by 30 nucleotides
HGI48_RS12935 and HGI48_RS12940 are separated by 29 nucleotides
HGI48_RS12920: HGI48_RS12920 - cell division protein ZapC, at 2,825,071 to 2,825,625
_RS12920
HGI48_RS12925: HGI48_RS12925 - quinone-dependent dihydroorotate dehydrogenase, at 2,825,943 to 2,826,950
_RS12925
HGI48_RS12930: HGI48_RS12930 - NADPH-dependent FMN reductase, at 2,827,274 to 2,827,828
_RS12930
HGI48_RS12935: HGI48_RS12935 - sulfonate ABC transporter substrate-binding protein, at 2,827,859 to 2,828,818
_RS12935
HGI48_RS12940: HGI48_RS12940 - FMNH2-dependent alkanesulfonate monooxygenase, at 2,828,848 to 2,829,996
_RS12940
Group
Condition
HGI48
_RS12920
HGI48
_RS12925
HGI48
_RS12930
HGI48
_RS12935
HGI48
_RS12940
plant
Atlantic
-3.3
-1.9
+0.3
+0.3
-0.0
carbon source
M9+glycerol
-0.5
-3.0
-0.3
+0.2
-0.8
carbon source
M9+glycerol
-1.3
-2.5
+0.1
-0.1
-0.4
carbon source
M9+glycerol
-0.5
-3.0
-0.3
-0.2
+0.0
carbon source
M9+sucrose
-1.4
-2.6
-0.3
+0.1
+0.5
plant
Atlantic
-0.5
-1.9
-1.0
-0.3
+0.0
plant
Upstate
-1.2
-2.1
+0.1
-0.3
+0.0
carbon source
M9+glycerol
-0.9
-2.4
+0.1
+0.0
-0.2
carbon source
M9+glycerol
+0.4
-2.9
-0.5
-0.0
-0.3
carbon source
M9+polygalacturonate
-0.6
-2.5
+0.0
-0.1
+0.1
plant
Norland
-0.4
-2.3
+0.2
-0.2
-0.3
carbon source
M9+sucrose
-0.7
-2.6
+0.2
+0.0
+0.2
plant
Norland
-0.7
-2.2
+0.5
-0.2
-0.1
control
PDB
-1.5
-1.3
+0.2
-0.1
-0.0
plant
Atlantic
-0.2
-1.9
-0.3
-0.2
-0.1
plant
Norland
-0.3
-1.6
+0.2
-0.6
-0.4
plant
Upstate
-0.5
-1.5
-0.1
-0.2
-0.2
carbon source
M9+glycerol
+0.1
-2.5
+0.1
-0.2
-0.1
carbon source
M9+polygalacturonate
-0.3
-2.5
+0.0
-0.1
+0.4
plant
Norland
+0.1
-2.3
-0.1
+0.1
-0.2
plant
Upstate
-0.5
-1.9
+0.2
+0.2
-0.2
plant
Norland
-0.5
-1.8
+0.2
+0.1
-0.2
plant
Upstate
-0.2
-2.1
-0.1
-0.0
+0.3
plant
Norland
-0.2
-1.2
-0.2
-0.4
+0.1
plant
Atlantic
-0.1
-1.5
-0.0
+0.2
-0.3
plant
Atlantic
+0.9
-1.5
-0.1
-0.7
-0.4
control
LB
-1.2
+0.1
-0.2
-0.2
-0.3
carbon source
M9+sucrose
+0.4
-1.9
-0.8
+0.1
+0.7
carbon source
M9+polygalacturonate
+0.2
-2.1
+0.3
+0.2
+0.3
control
PDB
-0.8
-0.7
+0.3
+0.5
-0.1
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