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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS12755 and HGI48_RS12760 are separated by 178 nucleotides
HGI48_RS12760 and HGI48_RS12765 are separated by 186 nucleotides
HGI48_RS12765 and HGI48_RS12770 are separated by 279 nucleotides
HGI48_RS12770 and HGI48_RS12775 are separated by 189 nucleotides
HGI48_RS12755: HGI48_RS12755 - IS30 family transposase, at 2,784,946 to 2,785,200
_RS12755
HGI48_RS12760: HGI48_RS12760 - tRNA-Val, at 2,785,379 to 2,785,455
_RS12760
HGI48_RS12765: HGI48_RS12765 - MFS transporter, at 2,785,642 to 2,786,490
_RS12765
HGI48_RS12770: HGI48_RS12770 - DUF1471 domain-containing protein, at 2,786,770 to 2,787,144
_RS12770
HGI48_RS12775: HGI48_RS12775 - hypothetical protein, at 2,787,334 to 2,787,750
_RS12775
Group
Condition
HGI48
_RS12755
HGI48
_RS12760
HGI48
_RS12765
HGI48
_RS12770
HGI48
_RS12775
carbon source
M9+sucrose
-0.5
N.D.
-0.0
-0.7
-0.5
plant
Atlantic
-0.4
N.D.
-0.0
-0.1
-0.3
carbon source
M9+sucrose
-0.3
N.D.
+0.0
-0.3
+0.1
control
LB
-0.5
N.D.
-0.1
+0.1
+0.1
plant
Norland
-0.0
N.D.
-0.0
-0.5
+0.2
carbon source
M9+polygalacturonate
-0.5
N.D.
-0.1
+0.2
+0.1
plant
Atlantic
-0.1
N.D.
+0.2
-0.3
+0.1
plant
Upstate
-0.2
N.D.
+0.1
-0.4
+0.3
plant
Norland
-0.5
N.D.
+0.2
+0.1
+0.1
plant
Norland
-0.4
N.D.
-0.1
+0.1
+0.3
carbon source
M9+polygalacturonate
-0.1
N.D.
-0.4
+0.2
+0.2
plant
Atlantic
+0.2
N.D.
-0.1
-0.4
+0.2
carbon source
M9+glycerol
-0.3
N.D.
+0.1
+0.0
+0.1
control
LB
-0.1
N.D.
+0.1
-0.3
+0.4
control
PDB
-0.2
N.D.
+0.0
-0.1
+0.4
control
LB
-0.4
N.D.
+0.2
+0.0
+0.2
carbon source
M9+glycerol
+0.1
N.D.
+0.2
-0.4
+0.1
plant
Norland
-0.1
N.D.
+0.2
-0.3
+0.3
control
PDB
-0.2
N.D.
-0.1
+0.1
+0.4
control
PDB
+0.0
N.D.
-0.1
+0.5
-0.3
plant
Atlantic
+0.2
N.D.
-0.1
-0.0
+0.2
carbon source
M9+glycerol
-0.4
N.D.
+0.3
+0.1
+0.3
plant
Norland
-0.1
N.D.
-0.1
+0.3
+0.4
carbon source
M9+polygalacturonate
+0.0
N.D.
-0.0
+0.0
+0.4
plant
Atlantic
-0.1
N.D.
+0.1
+0.0
+0.5
plant
Upstate
+0.2
N.D.
+0.2
-0.2
+0.3
control
PDB
+0.1
N.D.
-0.0
+0.2
+0.3
control
PDB
-0.1
N.D.
+0.2
+0.0
+0.5
carbon source
M9+glycerol
+0.2
N.D.
+0.1
+0.2
+0.3
plant
Atlantic
+0.3
N.D.
+0.1
+0.1
+0.4
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