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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS12410 and HGI48_RS12415 are separated by 387 nucleotides
HGI48_RS12415 and HGI48_RS12420 are separated by 160 nucleotides
HGI48_RS12420 and HGI48_RS12425 are separated by 395 nucleotides
HGI48_RS12425 and HGI48_RS12430 are separated by 55 nucleotides
HGI48_RS12410: HGI48_RS12410 - tRNA 2-thiocytidine(32) synthetase TtcA, at 2,712,295 to 2,713,236
_RS12410
HGI48_RS12415: HGI48_RS12415 - zinc transporter ZntB, at 2,713,624 to 2,714,610
_RS12415
HGI48_RS12420: HGI48_RS12420 - oligopeptide ABC transporter substrate-binding protein OppA, at 2,714,771 to 2,716,369
_RS12420
HGI48_RS12425: HGI48_RS12425 - hypothetical protein, at 2,716,765 to 2,717,012
_RS12425
HGI48_RS12430: HGI48_RS12430 - thiol peroxidase, at 2,717,068 to 2,717,571
_RS12430
Group
Condition
HGI48
_RS12410
HGI48
_RS12415
HGI48
_RS12420
HGI48
_RS12425
HGI48
_RS12430
plant
Norland
-0.9
-0.1
-0.1
N.D.
-1.0
plant
Norland
-0.7
+0.0
-0.1
N.D.
-0.6
plant
Atlantic
-0.1
-0.0
+0.3
N.D.
-1.3
plant
Atlantic
-1.1
-0.0
+0.3
N.D.
-0.1
control
LB
-0.6
+0.1
+0.1
N.D.
-0.5
plant
Upstate
-0.6
-0.0
+0.2
N.D.
-0.4
plant
Norland
-0.4
+0.1
-0.2
N.D.
-0.3
plant
Norland
-0.5
-0.1
-0.1
N.D.
-0.1
plant
Atlantic
-0.3
+0.3
-0.3
N.D.
-0.4
plant
Atlantic
-0.6
+0.1
-0.1
N.D.
-0.1
carbon source
M9+glycerol
-0.8
+0.0
+0.0
N.D.
+0.1
carbon source
M9+glycerol
-0.3
+0.1
-0.1
N.D.
-0.2
control
PDB
-0.5
-0.2
-0.2
N.D.
+0.4
plant
Upstate
-0.1
+0.2
-0.0
N.D.
-0.5
carbon source
M9+glycerol
+0.3
-0.2
+0.0
N.D.
-0.5
control
LB
-0.6
+0.1
+0.1
N.D.
+0.0
carbon source
M9+glycerol
-0.6
+0.1
+0.1
N.D.
+0.3
control
PDB
-0.2
-0.2
+0.0
N.D.
+0.3
plant
Atlantic
-0.7
-0.1
+0.1
N.D.
+0.6
control
PDB
+0.1
-0.5
-0.1
N.D.
+0.5
control
LB
-0.3
+0.1
+0.2
N.D.
+0.2
plant
Atlantic
-0.3
+0.2
+0.1
N.D.
+0.3
carbon source
M9+polygalacturonate
-0.4
-0.2
+0.1
N.D.
+1.3
carbon source
M9+glycerol
-0.4
+0.0
+0.2
N.D.
+1.0
carbon source
M9+glycerol
-0.4
-0.1
+0.1
N.D.
+1.3
carbon source
M9+polygalacturonate
-0.4
+0.0
-0.3
N.D.
+1.5
carbon source
M9+polygalacturonate
+0.3
-0.2
-0.1
N.D.
+2.1
carbon source
M9+sucrose
+0.0
+0.1
+0.1
N.D.
+2.6
carbon source
M9+sucrose
-0.0
-0.2
+0.2
N.D.
+2.9
carbon source
M9+sucrose
-0.0
-0.2
+0.1
N.D.
+3.5
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