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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS12330 and HGI48_RS12335 are separated by 342 nucleotides
HGI48_RS12335 and HGI48_RS12340 are separated by 304 nucleotides
HGI48_RS12340 and HGI48_RS12345 are separated by 100 nucleotides
HGI48_RS12345 and HGI48_RS12350 are separated by 10 nucleotides
HGI48_RS12330: HGI48_RS12330 - acid resistance repetitive basic protein Asr, at 2,689,968 to 2,690,459
_RS12330
HGI48_RS12335: HGI48_RS12335 - serine protease, at 2,690,802 to 2,691,620
_RS12335
HGI48_RS12340: HGI48_RS12340 - L-lactate permease, at 2,691,925 to 2,693,475
_RS12340
HGI48_RS12345: HGI48_RS12345 - (Fe-S)-binding protein, at 2,693,576 to 2,694,295
_RS12345
HGI48_RS12350: HGI48_RS12350 - iron-sulfur cluster-binding protein, at 2,694,306 to 2,695,727
_RS12350
Group
Condition
HGI48
_RS12330
HGI48
_RS12335
HGI48
_RS12340
HGI48
_RS12345
HGI48
_RS12350
control
PDB
-0.9
-0.0
-0.3
+0.1
-0.3
carbon source
M9+glycerol
-0.8
-0.1
-0.1
+0.3
-0.2
carbon source
M9+polygalacturonate
-0.3
+0.1
+0.1
-0.3
-0.3
control
PDB
-0.9
+0.4
-0.1
+0.1
-0.0
carbon source
M9+polygalacturonate
+0.0
-0.9
+0.0
+0.4
-0.1
control
PDB
-0.4
-0.2
-0.0
+0.3
-0.1
control
PDB
-0.6
+0.3
-0.1
+0.3
-0.1
carbon source
M9+glycerol
-0.2
+0.0
+0.2
+0.2
-0.5
plant
Norland
-0.1
+0.4
-0.1
+0.0
-0.3
control
PDB
-0.5
+0.5
-0.2
+0.2
-0.1
control
PDB
-0.7
+0.3
+0.1
+0.2
+0.1
carbon source
M9+polygalacturonate
-0.3
+0.4
-0.0
-0.2
+0.1
plant
Atlantic
-0.7
+0.9
-0.3
+0.4
-0.3
carbon source
M9+glycerol
-0.2
+0.3
-0.1
+0.3
-0.1
carbon source
M9+glycerol
-0.0
+0.6
+0.0
-0.2
+0.0
plant
Norland
+0.1
+0.6
-0.0
+0.0
-0.2
control
LB
+0.0
+0.5
+0.0
+0.2
-0.2
plant
Atlantic
-0.1
+0.7
-0.2
+0.2
-0.0
plant
Atlantic
+0.5
+0.4
-0.1
-0.2
-0.1
plant
Norland
-0.1
+0.4
-0.1
+0.4
-0.0
plant
Upstate
+0.3
+0.2
-0.0
+0.2
-0.1
carbon source
M9+glycerol
+0.3
+0.6
-0.0
+0.2
-0.4
plant
Norland
+0.3
+0.6
-0.0
+0.1
-0.3
plant
Norland
+0.0
+1.1
-0.2
-0.1
+0.0
carbon source
M9+sucrose
-0.3
+1.2
-0.1
+0.1
-0.0
plant
Upstate
+0.6
+0.2
-0.1
+0.2
+0.1
carbon source
M9+sucrose
+0.0
+1.1
-0.2
-0.0
+0.1
carbon source
M9+sucrose
+0.0
+1.2
-0.2
+0.2
-0.1
plant
Atlantic
+0.2
+1.0
+0.3
+0.2
-0.4
plant
Atlantic
+0.3
+0.5
+0.2
+0.2
+0.1
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