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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS12260 and HGI48_RS12265 are separated by 66 nucleotides
HGI48_RS12265 and HGI48_RS12270 are separated by 330 nucleotides
HGI48_RS12270 and HGI48_RS12275 are separated by 162 nucleotides
HGI48_RS12275 and HGI48_RS12280 are separated by 92 nucleotides
HGI48_RS12260: HGI48_RS12260 - PAS domain-containing protein, at 2,674,348 to 2,675,895
_RS12260
HGI48_RS12265: HGI48_RS12265 - hypothetical protein, at 2,675,962 to 2,676,261
_RS12265
HGI48_RS12270: HGI48_RS12270 - metallophosphoesterase, at 2,676,592 to 2,677,278
_RS12270
HGI48_RS12275: HGI48_RS12275 - ABC transporter substrate-binding protein, at 2,677,441 to 2,679,042
_RS12275
HGI48_RS12280: HGI48_RS12280 - ATP-binding cassette domain-containing protein, at 2,679,135 to 2,679,818
_RS12280
Group
Condition
HGI48
_RS12260
HGI48
_RS12265
HGI48
_RS12270
HGI48
_RS12275
HGI48
_RS12280
carbon source
M9+polygalacturonate
-0.1
+0.4
-0.0
-0.9
-2.1
carbon source
M9+polygalacturonate
+0.1
+0.3
+0.1
-1.1
-1.7
carbon source
M9+polygalacturonate
-0.3
+0.5
-0.1
-0.8
-1.6
carbon source
M9+sucrose
-0.1
-0.0
+0.1
-0.7
-1.2
carbon source
M9+sucrose
-0.2
-0.1
+0.2
-0.5
-0.7
carbon source
M9+sucrose
-0.1
+0.3
+0.3
-0.6
-1.0
plant
Atlantic
-0.3
+0.2
-0.7
-0.2
+0.0
control
PDB
-0.1
+0.3
-0.2
-0.1
-0.4
plant
Upstate
-0.3
-0.1
+0.1
-0.2
+0.1
control
PDB
+0.0
-0.4
+0.5
-0.0
-0.5
control
PDB
-0.0
-0.1
-0.2
+0.1
-0.1
control
PDB
-0.3
+0.4
-0.1
-0.0
-0.1
plant
Atlantic
-0.3
+0.3
-0.1
+0.1
+0.0
plant
Norland
+0.0
-0.1
+0.1
-0.3
+0.3
carbon source
M9+glycerol
-0.2
+0.3
+0.1
+0.1
-0.2
carbon source
M9+glycerol
-0.1
+0.1
+0.2
-0.1
+0.1
plant
Upstate
-0.1
-0.1
-0.1
+0.2
+0.2
control
PDB
-0.2
+0.3
+0.2
-0.1
-0.0
plant
Upstate
-0.1
+0.2
+0.1
+0.1
-0.0
control
LB
-0.1
+0.0
+0.3
+0.0
+0.2
plant
Atlantic
-0.1
-0.3
+0.3
+0.2
+0.4
carbon source
M9+glycerol
+0.2
+0.3
+0.2
-0.1
+0.0
plant
Atlantic
-0.2
+0.6
+0.3
+0.1
-0.2
carbon source
M9+glycerol
+0.2
+0.1
+0.3
+0.0
-0.0
plant
Norland
-0.2
+0.2
+0.3
+0.1
+0.3
control
LB
-0.1
+0.3
+0.3
-0.0
+0.1
plant
Norland
-0.1
+0.7
+0.1
-0.0
+0.1
plant
Atlantic
-0.2
+0.1
+0.0
+0.2
+0.8
plant
Upstate
+0.2
+0.1
+0.3
+0.1
+0.2
carbon source
M9+glycerol
-0.0
+0.5
+0.2
-0.1
+0.3
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