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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS12205 and HGI48_RS12210 are separated by 60 nucleotides
HGI48_RS12210 and HGI48_RS12215 overlap by 4 nucleotides
HGI48_RS12215 and HGI48_RS12220 overlap by 8 nucleotides
HGI48_RS12220 and HGI48_RS12225 are separated by 10 nucleotides
HGI48_RS12205: HGI48_RS12205 - phage major tail tube protein, at 2,662,477 to 2,662,995
_RS12205
HGI48_RS12210: HGI48_RS12210 - phage tail assembly protein, at 2,663,056 to 2,663,346
_RS12210
HGI48_RS12215: HGI48_RS12215 - GpE family phage tail protein, at 2,663,343 to 2,663,498
_RS12215
HGI48_RS12220: HGI48_RS12220 - hypothetical protein, at 2,663,491 to 2,664,576
_RS12220
HGI48_RS12225: HGI48_RS12225 - phage tail protein, at 2,664,587 to 2,665,081
_RS12225
Group
Condition
HGI48
_RS12205
HGI48
_RS12210
HGI48
_RS12215
HGI48
_RS12220
HGI48
_RS12225
plant
Atlantic
+0.1
-1.5
-0.4
-0.6
+0.2
plant
Upstate
-0.4
-0.5
-0.4
+0.0
-0.1
control
LB
+0.0
-0.5
-0.4
-0.2
-0.0
plant
Norland
-0.3
-0.0
-0.7
-0.3
+0.3
carbon source
M9+sucrose
+0.0
-0.1
-0.4
-0.0
-0.4
plant
Atlantic
+0.1
-0.5
-0.1
-0.5
+0.1
plant
Upstate
-0.1
-0.5
+0.0
-0.4
+0.1
control
PDB
-0.0
-0.3
+0.1
-0.5
-0.1
control
PDB
-0.0
-0.7
+0.1
+0.1
-0.2
plant
Atlantic
-0.1
-0.1
-0.0
-0.5
+0.2
plant
Upstate
+0.0
+0.4
-0.5
-0.5
+0.1
carbon source
M9+polygalacturonate
+0.3
+0.0
-0.3
-0.1
-0.3
control
PDB
-0.0
+0.2
-0.7
+0.1
-0.1
plant
Norland
-0.2
-0.1
+0.1
-0.4
+0.2
plant
Norland
+0.3
-0.6
+0.1
-0.3
+0.2
carbon source
M9+polygalacturonate
+0.4
+0.4
-1.2
+0.1
+0.1
plant
Norland
-0.2
+0.1
+0.3
-0.5
+0.1
carbon source
M9+glycerol
-0.5
-0.3
+0.5
-0.1
+0.2
plant
Atlantic
+0.5
-0.0
-0.5
-0.0
-0.1
carbon source
M9+polygalacturonate
+0.1
-0.2
-0.5
+0.4
-0.0
control
PDB
-0.2
+0.4
-0.2
-0.2
+0.1
carbon source
M9+glycerol
-0.2
-0.0
+0.4
+0.1
-0.2
carbon source
M9+glycerol
+0.3
+0.1
+0.3
-0.3
-0.3
control
PDB
-0.2
+0.3
-0.3
+0.1
+0.2
plant
Upstate
+0.1
+0.5
-0.1
-0.3
-0.0
plant
Upstate
+0.1
-0.2
+0.4
-0.3
+0.3
plant
Norland
+0.1
-0.0
+0.6
-0.3
-0.0
plant
Atlantic
+0.1
-0.2
-0.1
+0.5
+0.2
plant
Atlantic
+0.8
-0.1
-0.1
-0.2
+0.2
carbon source
M9+glycerol
+0.2
+0.6
+0.1
-0.1
+0.1
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