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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS12070 and HGI48_RS12075 are separated by 37 nucleotides
HGI48_RS12075 and HGI48_RS12080 are separated by 109 nucleotides
HGI48_RS12080 and HGI48_RS12085 are separated by 99 nucleotides
HGI48_RS12085 and HGI48_RS12090 are separated by 116 nucleotides
HGI48_RS12070: HGI48_RS12070 - membrane integrity lipid transport subunit YebS, at 2,635,778 to 2,637,016
_RS12070
HGI48_RS12075: HGI48_RS12075 - MCE family protein, at 2,637,054 to 2,639,684
_RS12075
HGI48_RS12080: HGI48_RS12080 - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 2,639,794 to 2,641,242
_RS12080
HGI48_RS12085: HGI48_RS12085 - YebW family protein, at 2,641,342 to 2,641,533
_RS12085
HGI48_RS12090: HGI48_RS12090 - HAMP domain-containing protein, at 2,641,650 to 2,643,647
_RS12090
Group
Condition
HGI48
_RS12070
HGI48
_RS12075
HGI48
_RS12080
HGI48
_RS12085
HGI48
_RS12090
carbon source
M9+polygalacturonate
-0.3
+0.2
-0.1
-0.4
-0.1
carbon source
M9+polygalacturonate
-0.1
+0.2
+0.3
-0.3
-0.0
plant
Atlantic
+0.0
-0.3
-0.3
+0.3
+0.2
plant
Atlantic
-0.2
-0.3
-0.0
+0.6
-0.1
control
LB
-0.0
-0.1
-0.2
+0.2
+0.2
plant
Norland
+0.0
+0.1
-0.3
+0.3
+0.0
plant
Norland
+0.2
-0.1
-0.1
+0.1
+0.2
control
PDB
+0.2
+0.1
-0.2
-0.0
+0.2
control
PDB
+0.3
-0.1
-0.1
+0.2
-0.0
plant
Upstate
+0.1
+0.0
-0.0
-0.2
+0.3
plant
Upstate
-0.1
-0.1
+0.3
+0.0
+0.1
plant
Norland
-0.1
+0.0
+0.2
+0.0
+0.2
carbon source
M9+polygalacturonate
+0.1
+0.3
-0.1
-0.1
+0.1
plant
Norland
-0.1
-0.1
+0.1
+0.3
+0.2
plant
Atlantic
+0.1
+0.2
-0.2
+0.2
+0.1
control
PDB
+0.1
+0.2
+0.1
+0.2
-0.1
plant
Upstate
-0.1
+0.1
+0.1
+0.3
+0.2
plant
Norland
-0.0
-0.1
+0.1
+0.3
+0.1
plant
Upstate
+0.1
+0.0
-0.1
+0.3
+0.2
plant
Atlantic
-0.0
-0.1
+0.3
-0.0
+0.4
carbon source
M9+glycerol
-0.1
+0.1
+0.1
+0.3
+0.2
carbon source
M9+glycerol
+0.0
+0.1
-0.1
+0.4
+0.2
control
PDB
+0.3
-0.1
-0.1
+0.4
+0.1
carbon source
M9+glycerol
+0.1
-0.1
+0.1
+0.4
+0.1
carbon source
M9+sucrose
-0.0
+0.4
+0.4
-0.1
+0.1
control
LB
-0.1
+0.1
+0.3
+0.2
+0.2
carbon source
M9+glycerol
+0.2
+0.1
-0.2
+0.2
+0.4
carbon source
M9+sucrose
-0.0
+0.3
+0.5
+0.1
+0.0
carbon source
M9+sucrose
+0.1
+0.2
+0.6
-0.1
+0.2
carbon source
M9+glycerol
+0.1
+0.2
+0.0
+0.3
+0.6
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