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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS11850 and HGI48_RS11855 are separated by 315 nucleotides
HGI48_RS11855 and HGI48_RS11860 are separated by 14 nucleotides
HGI48_RS11860 and HGI48_RS11865 are separated by 126 nucleotides
HGI48_RS11865 and HGI48_RS11870 are separated by 438 nucleotides
HGI48_RS11850: HGI48_RS11850 - polyamine ABC transporter substrate-binding protein, at 2,588,171 to 2,589,202
_RS11850
HGI48_RS11855: HGI48_RS11855 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,589,518 to 2,590,978
_RS11855
HGI48_RS11860: HGI48_RS11860 - 4-aminobutyrate--2-oxoglutarate transaminase, at 2,590,993 to 2,592,258
_RS11860
HGI48_RS11865: HGI48_RS11865 - PLP-dependent aminotransferase family protein, at 2,592,385 to 2,593,872
_RS11865
HGI48_RS11870: HGI48_RS11870 - ABC transporter ATP-binding protein, at 2,594,311 to 2,595,405
_RS11870
Group
Condition
HGI48
_RS11850
HGI48
_RS11855
HGI48
_RS11860
HGI48
_RS11865
HGI48
_RS11870
plant
Atlantic
+0.0
+0.3
-0.1
-0.6
-0.2
plant
Norland
+0.2
-0.0
-0.1
-0.3
-0.1
plant
Norland
+0.2
-0.1
-0.1
-0.1
-0.1
carbon source
M9+glycerol
+0.3
-0.0
-0.1
-0.2
-0.1
plant
Upstate
+0.1
-0.2
-0.4
+0.0
+0.3
control
LB
+0.4
-0.1
-0.1
-0.4
+0.0
carbon source
M9+polygalacturonate
-0.2
+0.6
+0.1
-0.2
-0.3
carbon source
M9+polygalacturonate
-0.5
-0.1
+0.3
+0.3
-0.1
control
LB
+0.2
-0.1
+0.1
-0.0
-0.1
plant
Atlantic
+0.3
-0.2
+0.1
-0.0
-0.1
plant
Norland
+0.2
+0.1
-0.0
-0.3
+0.2
plant
Atlantic
+0.2
-0.0
-0.1
-0.1
+0.3
plant
Norland
+0.2
-0.1
+0.2
+0.1
+0.0
plant
Norland
+0.5
+0.0
+0.0
-0.1
-0.0
plant
Upstate
+0.1
+0.1
+0.3
+0.0
-0.1
carbon source
M9+polygalacturonate
+0.1
+0.1
+0.3
+0.2
-0.1
plant
Atlantic
+0.7
+0.3
+0.1
-0.2
-0.2
carbon source
M9+glycerol
+0.4
+0.2
+0.4
-0.1
-0.1
control
PDB
+0.3
+0.1
+0.3
+0.0
+0.1
plant
Atlantic
+0.1
-0.1
+0.6
+0.1
+0.2
control
PDB
+0.7
+0.1
+0.1
+0.1
-0.1
control
PDB
+0.4
+0.1
+0.3
-0.0
+0.2
carbon source
M9+glycerol
-0.0
+0.4
+0.5
+0.1
+0.1
control
PDB
+0.5
-0.0
+0.4
+0.0
+0.0
carbon source
M9+sucrose
+0.2
+0.2
+0.6
+0.1
-0.0
plant
Upstate
+0.5
+0.2
+0.3
-0.1
+0.1
control
PDB
+0.5
+0.1
+0.2
+0.2
+0.3
control
PDB
+0.7
-0.0
+0.4
-0.0
+0.3
carbon source
M9+sucrose
-0.1
+0.4
+0.9
+0.3
-0.1
carbon source
M9+sucrose
+0.1
+0.7
+1.0
+0.4
-0.3
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