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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS11770 and HGI48_RS11775 are separated by 245 nucleotides
HGI48_RS11775 and HGI48_RS11780 are separated by 548 nucleotides
HGI48_RS11780 and HGI48_RS11785 are separated by 51 nucleotides
HGI48_RS11785 and HGI48_RS11790 are separated by 42 nucleotides
HGI48_RS11770: HGI48_RS11770 - type III secretion system export apparatus subunit SctU, at 2,569,934 to 2,571,013
_RS11770
HGI48_RS11775: HGI48_RS11775 - peptide antibiotic transporter SbmA, at 2,571,259 to 2,572,488
_RS11775
HGI48_RS11780: HGI48_RS11780 - methyl-accepting chemotaxis protein, at 2,573,037 to 2,575,013
_RS11780
HGI48_RS11785: HGI48_RS11785 - 4-hydroxy-tetrahydrodipicolinate synthase, at 2,575,065 to 2,575,979
_RS11785
HGI48_RS11790: HGI48_RS11790 - TetR family transcriptional regulator, at 2,576,022 to 2,576,699
_RS11790
Group
Condition
HGI48
_RS11770
HGI48
_RS11775
HGI48
_RS11780
HGI48
_RS11785
HGI48
_RS11790
plant
Atlantic
-0.3
+0.1
-0.2
-0.7
-0.5
carbon source
M9+glycerol
-0.5
-0.0
-0.1
-0.5
-0.2
carbon source
M9+glycerol
-0.3
+0.1
+0.1
-0.4
-0.2
plant
Atlantic
-0.5
+0.3
+0.1
-0.3
-0.3
control
PDB
+0.0
-0.4
+0.1
-0.4
-0.0
plant
Upstate
+0.2
+0.1
+0.0
-0.5
-0.4
control
PDB
+0.2
-0.3
-0.1
-0.3
+0.2
control
PDB
-0.2
-0.4
+0.0
-0.1
+0.3
control
PDB
-0.4
-0.2
+0.2
-0.0
+0.1
plant
Upstate
-0.3
+0.3
-0.1
-0.5
+0.2
carbon source
M9+glycerol
-0.0
+0.2
+0.1
-0.2
-0.4
carbon source
M9+glycerol
-0.3
-0.1
+0.2
-0.1
-0.1
plant
Upstate
+0.1
+0.3
-0.3
-0.1
-0.4
control
LB
-0.4
+0.2
+0.0
-0.3
+0.2
plant
Upstate
-0.1
+0.5
-0.0
-0.2
-0.4
plant
Norland
-0.2
+0.4
+0.1
-0.4
-0.1
plant
Upstate
-0.1
+0.4
-0.0
+0.0
-0.5
plant
Norland
-0.0
+0.5
+0.0
-0.3
-0.2
carbon source
M9+sucrose
+0.1
+0.1
-0.4
+0.1
-0.1
plant
Atlantic
-0.0
+0.4
-0.1
-0.2
-0.1
carbon source
M9+glycerol
-0.2
+0.3
+0.1
-0.3
+0.0
plant
Norland
-0.4
+0.7
-0.1
-0.3
+0.3
plant
Atlantic
+0.2
+0.7
-0.2
-0.1
-0.3
plant
Atlantic
+0.2
+0.4
+0.0
+0.1
-0.4
plant
Norland
+0.2
+0.4
-0.1
-0.1
-0.2
plant
Norland
+0.1
+0.3
-0.1
-0.3
+0.4
carbon source
M9+sucrose
+0.2
+0.1
-0.1
-0.1
+0.4
carbon source
M9+polygalacturonate
+0.5
+0.0
-0.1
+0.2
-0.1
plant
Norland
+0.3
+0.5
-0.1
-0.0
+0.3
carbon source
M9+polygalacturonate
+0.6
+0.2
+0.1
+0.1
+0.2
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