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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS11395 and HGI48_RS11400 are separated by 14 nucleotides
HGI48_RS11400 and HGI48_RS11405 are separated by 249 nucleotides
HGI48_RS11405 and HGI48_RS11410 are separated by 277 nucleotides
HGI48_RS11410 and HGI48_RS11415 are separated by 77 nucleotides
HGI48_RS11395: HGI48_RS11395 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 2,481,436 to 2,482,563
_RS11395
HGI48_RS11400: HGI48_RS11400 - carbohydrate ABC transporter substrate-binding protein, at 2,482,578 to 2,483,870
_RS11400
HGI48_RS11405: HGI48_RS11405 - oligogalacturonate-specific porin KdgM, at 2,484,120 to 2,484,839
_RS11405
HGI48_RS11410: HGI48_RS11410 - alpha/beta hydrolase, at 2,485,117 to 2,486,085
_RS11410
HGI48_RS11415: HGI48_RS11415 - metal-dependent hydrolase, at 2,486,163 to 2,486,741
_RS11415
Group
Condition
HGI48
_RS11395
HGI48
_RS11400
HGI48
_RS11405
HGI48
_RS11410
HGI48
_RS11415
plant
Atlantic
-0.4
-0.4
-0.1
-0.4
+0.1
carbon source
M9+glycerol
-0.1
-0.2
+0.1
-0.0
-0.5
plant
Norland
+0.1
-0.2
-0.1
-0.2
-0.4
carbon source
M9+glycerol
+0.0
-0.3
-0.1
-0.2
-0.3
carbon source
M9+glycerol
+0.0
-0.2
-0.0
-0.4
+0.1
plant
Norland
-0.1
-0.3
+0.1
+0.2
-0.4
plant
Upstate
+0.1
-0.4
+0.2
-0.2
-0.1
control
LB
+0.1
-0.2
-0.4
+0.0
+0.1
plant
Upstate
+0.0
-0.4
+0.2
+0.1
-0.2
plant
Norland
+0.3
-0.3
+0.1
-0.2
-0.2
carbon source
M9+glycerol
-0.2
-0.1
+0.0
+0.2
-0.2
plant
Atlantic
+0.2
-0.1
-0.1
-0.1
-0.2
carbon source
M9+glycerol
+0.1
-0.1
+0.2
+0.1
-0.4
control
PDB
+0.0
+0.1
-0.3
-0.1
+0.2
plant
Upstate
+0.2
-0.2
-0.0
-0.1
+0.1
plant
Upstate
+0.2
-0.2
-0.0
-0.2
+0.2
control
LB
+0.1
-0.2
-0.1
+0.1
+0.2
control
PDB
+0.4
+0.1
-0.5
-0.2
+0.3
carbon source
M9+sucrose
+0.2
-0.0
+0.3
+0.0
-0.4
carbon source
M9+glycerol
+0.1
-0.4
+0.3
-0.0
+0.1
plant
Atlantic
+0.3
-0.3
+0.7
-0.0
-0.5
plant
Norland
+0.1
-0.1
+0.6
-0.1
-0.2
control
PDB
+0.1
+0.1
-0.1
-0.0
+0.3
carbon source
M9+polygalacturonate
+0.4
+0.1
+0.2
-0.1
-0.3
carbon source
M9+polygalacturonate
+0.2
+0.1
+0.1
+0.1
-0.1
control
PDB
+0.2
-0.1
-0.1
+0.3
+0.2
carbon source
M9+polygalacturonate
+0.8
+0.6
-0.3
-0.2
-0.5
plant
Atlantic
+0.0
-0.2
-0.0
+0.2
+0.7
plant
Atlantic
+0.2
-0.1
-0.1
+0.0
+0.8
plant
Atlantic
+0.1
+0.0
+0.4
+0.2
+0.3
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