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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS11375 and HGI48_RS11380 are separated by 261 nucleotides
HGI48_RS11380 and HGI48_RS11385 are separated by 44 nucleotides
HGI48_RS11385 and HGI48_RS11390 overlap by 8 nucleotides
HGI48_RS11390 and HGI48_RS11395 are separated by 13 nucleotides
HGI48_RS11375: HGI48_RS11375 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 2,476,938 to 2,477,699
_RS11375
HGI48_RS11380: HGI48_RS11380 - pectate lyase, at 2,477,961 to 2,479,592
_RS11380
HGI48_RS11385: HGI48_RS11385 - sugar ABC transporter permease, at 2,479,637 to 2,480,527
_RS11385
HGI48_RS11390: HGI48_RS11390 - carbohydrate ABC transporter permease, at 2,480,520 to 2,481,422
_RS11390
HGI48_RS11395: HGI48_RS11395 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 2,481,436 to 2,482,563
_RS11395
Group
Condition
HGI48
_RS11375
HGI48
_RS11380
HGI48
_RS11385
HGI48
_RS11390
HGI48
_RS11395
plant
Atlantic
-3.5
+0.1
+0.1
-0.5
+0.3
plant
Atlantic
-2.4
-0.0
-0.4
-0.5
+0.1
plant
Atlantic
-1.5
-0.4
+0.1
-0.7
-0.4
plant
Atlantic
-2.1
+0.2
-0.2
-0.3
+0.0
plant
Norland
-1.9
-0.2
-0.2
-0.0
+0.1
plant
Upstate
-2.0
-0.1
+0.1
-0.2
+0.0
plant
Upstate
-1.9
-0.0
-0.1
-0.1
+0.2
plant
Upstate
-1.8
-0.1
-0.2
-0.2
+0.2
plant
Norland
-1.8
+0.1
-0.3
-0.2
+0.3
plant
Atlantic
-1.4
-0.1
-0.2
-0.2
+0.2
carbon source
M9+polygalacturonate
-2.5
+0.1
+0.1
+0.4
+0.2
plant
Atlantic
-1.4
-0.2
-0.1
-0.1
+0.2
carbon source
M9+polygalacturonate
-1.8
-0.1
+0.4
-0.3
+0.4
plant
Norland
-1.5
+0.1
-0.2
+0.1
+0.1
control
PDB
-0.7
-0.1
-0.3
-0.2
+0.0
carbon source
M9+glycerol
-0.4
+0.0
-0.0
-0.6
-0.2
plant
Norland
-1.1
+0.1
+0.2
-0.3
+0.1
plant
Norland
-1.3
+0.4
-0.0
-0.3
+0.0
control
PDB
-0.4
-0.3
-0.1
-0.2
+0.0
control
PDB
-0.7
-0.2
-0.0
-0.0
+0.1
carbon source
M9+glycerol
-0.2
-0.3
+0.0
-0.2
-0.1
control
PDB
-1.1
-0.1
+0.2
-0.0
+0.4
plant
Upstate
-0.5
+0.0
-0.1
-0.1
+0.1
carbon source
M9+glycerol
-0.4
+0.1
-0.3
+0.0
+0.0
plant
Norland
-0.5
+0.4
-0.1
-0.1
-0.1
control
LB
-0.5
+0.1
-0.1
-0.0
+0.1
carbon source
M9+glycerol
-0.1
-0.4
-0.2
+0.3
+0.1
control
PDB
-0.5
+0.1
+0.0
-0.1
+0.2
carbon source
M9+polygalacturonate
-1.9
+0.0
+0.6
+0.7
+0.8
carbon source
M9+sucrose
+0.8
+0.2
+0.2
+0.1
+0.2
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