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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS11355 and HGI48_RS11360 are separated by 42 nucleotides
HGI48_RS11360 and HGI48_RS11365 are separated by 254 nucleotides
HGI48_RS11365 and HGI48_RS11370 are separated by 323 nucleotides
HGI48_RS11370 and HGI48_RS11375 are separated by 180 nucleotides
HGI48_RS11355: HGI48_RS11355 - fructosamine kinase family protein, at 2,473,562 to 2,474,419
_RS11355
HGI48_RS11360: HGI48_RS11360 - YniB family protein, at 2,474,462 to 2,475,010
_RS11360
HGI48_RS11365: HGI48_RS11365 - cupin domain-containing protein, at 2,475,265 to 2,475,597
_RS11365
HGI48_RS11370: HGI48_RS11370 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 2,475,921 to 2,476,757
_RS11370
HGI48_RS11375: HGI48_RS11375 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 2,476,938 to 2,477,699
_RS11375
Group
Condition
HGI48
_RS11355
HGI48
_RS11360
HGI48
_RS11365
HGI48
_RS11370
HGI48
_RS11375
carbon source
M9+polygalacturonate
+0.1
-0.6
-1.5
-1.1
-2.5
plant
Atlantic
-0.5
-0.1
-0.0
-0.6
-3.5
plant
Atlantic
+0.1
-0.9
-0.2
-1.0
-2.4
carbon source
M9+polygalacturonate
+0.4
-0.4
-0.6
-1.4
-1.9
carbon source
M9+polygalacturonate
+0.5
-0.3
-0.9
-1.3
-1.8
plant
Upstate
-0.4
+0.0
-0.3
-0.5
-1.9
plant
Atlantic
-0.1
-0.0
-0.2
-0.3
-2.1
plant
Atlantic
-0.1
-0.4
+0.1
-0.6
-1.5
plant
Upstate
-0.2
+0.3
-0.3
-0.5
-1.8
plant
Norland
-0.2
-0.1
+0.1
-0.3
-1.9
plant
Upstate
+0.0
+0.2
-0.2
-0.4
-2.0
plant
Norland
-0.2
+0.1
-0.0
-0.4
-1.8
plant
Atlantic
+0.1
-0.2
-0.4
-0.2
-1.4
plant
Norland
-0.2
-0.5
-0.0
-0.3
-1.1
plant
Atlantic
-0.1
-0.2
-0.0
-0.3
-1.4
plant
Norland
-0.3
+0.1
-0.2
-0.4
-1.3
plant
Norland
+0.2
+0.0
-0.2
-0.4
-1.5
plant
Upstate
-0.3
-0.1
-0.2
-0.5
-0.5
control
PDB
-0.1
-0.1
-0.2
-0.2
-0.7
plant
Upstate
-0.2
-0.1
-0.2
-0.3
-0.4
control
LB
-0.3
-0.1
-0.2
-0.0
-0.5
control
PDB
-0.4
+0.0
-0.4
-0.0
-0.4
carbon source
M9+sucrose
-0.2
-0.3
-0.2
-0.2
-0.2
control
PDB
-0.2
-0.3
-0.0
+0.2
-0.7
control
PDB
-0.0
+0.1
-0.0
+0.0
-1.1
plant
Norland
+0.1
+0.2
-0.3
-0.2
-0.5
carbon source
M9+glycerol
-0.3
+0.3
-0.2
+0.0
-0.5
carbon source
M9+sucrose
-0.2
-1.0
-0.0
-0.2
+0.8
control
PDB
-0.3
+0.0
-0.3
-0.1
+0.4
carbon source
M9+glycerol
-0.0
+0.4
+0.3
+0.0
+0.3
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