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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS11115 and HGI48_RS11120 are separated by 222 nucleotides
HGI48_RS11120 and HGI48_RS11125 are separated by 128 nucleotides
HGI48_RS11125 and HGI48_RS11130 are separated by 13 nucleotides
HGI48_RS11130 and HGI48_RS11135 are separated by 245 nucleotides
HGI48_RS11115: HGI48_RS11115 - AvrE-family type 3 secretion system effector, at 2,415,090 to 2,419,970
_RS11115
HGI48_RS11120: HGI48_RS11120 - type III effector protein, at 2,420,193 to 2,421,272
_RS11120
HGI48_RS11125: HGI48_RS11125 - pectate lyase, at 2,421,401 to 2,423,218
_RS11125
HGI48_RS11130: HGI48_RS11130 - DNA-binding protein, at 2,423,232 to 2,423,564
_RS11130
HGI48_RS11135: HGI48_RS11135 - SDR family oxidoreductase, at 2,423,810 to 2,424,484
_RS11135
Group
Condition
HGI48
_RS11115
HGI48
_RS11120
HGI48
_RS11125
HGI48
_RS11130
HGI48
_RS11135
carbon source
M9+glycerol
-0.0
N.D.
-0.5
-0.2
-0.5
carbon source
M9+glycerol
+0.1
N.D.
+0.1
-0.2
-0.9
carbon source
M9+glycerol
-0.0
N.D.
-0.1
-0.5
-0.3
carbon source
M9+glycerol
-0.0
N.D.
-0.6
+0.1
-0.3
carbon source
M9+glycerol
-0.1
N.D.
-0.0
-0.6
-0.1
plant
Norland
+0.0
N.D.
-0.3
+0.0
-0.5
plant
Upstate
+0.1
N.D.
-0.3
+0.3
-0.5
carbon source
M9+polygalacturonate
-0.0
N.D.
-0.1
+0.5
-0.7
plant
Norland
+0.0
N.D.
+0.1
+0.2
-0.5
control
PDB
+0.1
N.D.
-0.1
+0.4
-0.2
carbon source
M9+sucrose
+0.1
N.D.
-0.2
+0.4
-0.2
carbon source
M9+polygalacturonate
-0.2
N.D.
+0.3
+0.3
-0.2
carbon source
M9+polygalacturonate
-0.2
N.D.
-0.2
+0.6
-0.1
plant
Atlantic
+0.1
N.D.
-0.7
+0.2
+0.6
plant
Upstate
+0.1
N.D.
-0.3
+0.2
+0.1
plant
Norland
+0.1
N.D.
+0.1
+0.4
-0.4
plant
Atlantic
+0.0
N.D.
-0.3
+0.5
-0.0
control
LB
+0.1
N.D.
-0.0
+0.4
-0.2
plant
Norland
+0.1
N.D.
-0.1
+0.7
-0.3
plant
Norland
+0.1
N.D.
+0.1
+0.4
-0.1
plant
Upstate
+0.2
N.D.
-0.0
+0.7
-0.3
plant
Atlantic
+0.3
N.D.
+0.5
+0.3
-0.3
control
PDB
+0.3
N.D.
+0.0
+0.2
+0.1
control
PDB
+0.2
N.D.
+0.2
+0.2
+0.2
carbon source
M9+sucrose
-0.1
N.D.
+0.1
+1.2
-0.3
plant
Atlantic
-0.1
N.D.
+0.1
+0.5
+0.4
control
LB
+0.1
N.D.
+0.0
+0.8
+0.1
plant
Norland
+0.0
N.D.
-0.1
+1.1
+0.2
control
PDB
+0.1
N.D.
+0.2
+0.6
+0.3
control
PDB
+0.3
N.D.
+0.1
+0.9
+0.3
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