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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS11070 and HGI48_RS11075 overlap by 14 nucleotides
HGI48_RS11075 and HGI48_RS11080 overlap by 4 nucleotides
HGI48_RS11080 and HGI48_RS11085 are separated by 62 nucleotides
HGI48_RS11085 and HGI48_RS11090 are separated by 307 nucleotides
HGI48_RS11070: HGI48_RS11070 - tetratricopeptide repeat protein, at 2,401,037 to 2,401,588
_RS11070
HGI48_RS11075: HGI48_RS11075 - sigma-70 family RNA polymerase sigma factor, at 2,401,575 to 2,402,126
_RS11075
HGI48_RS11080: HGI48_RS11080 - hypothetical protein, at 2,402,123 to 2,402,932
_RS11080
HGI48_RS11085: HGI48_RS11085 - YceI family protein, at 2,402,995 to 2,403,570
_RS11085
HGI48_RS11090: HGI48_RS11090 - hypothetical protein, at 2,403,878 to 2,404,318
_RS11090
Group
Condition
HGI48
_RS11070
HGI48
_RS11075
HGI48
_RS11080
HGI48
_RS11085
HGI48
_RS11090
carbon source
M9+polygalacturonate
-0.2
+0.2
-0.2
+0.5
-1.4
control
PDB
+0.2
+0.1
-0.2
-0.2
-0.7
control
LB
+0.1
-0.2
-0.1
+0.1
-0.8
plant
Upstate
-0.1
-0.0
-0.5
+0.1
-0.2
carbon source
M9+sucrose
+0.2
-0.3
+0.2
-0.3
-0.3
control
PDB
+0.2
+0.4
-0.1
+0.1
-1.0
plant
Norland
+0.0
-0.1
-0.1
+0.1
-0.4
control
PDB
+0.0
+0.2
-0.2
+0.1
-0.5
carbon source
M9+polygalacturonate
+0.2
+0.2
-0.3
+0.2
-0.6
control
PDB
+0.1
-0.4
-0.3
+0.1
+0.2
plant
Atlantic
-0.0
-0.1
-0.3
+0.3
-0.2
plant
Atlantic
-0.2
-0.2
-0.2
-0.1
+0.4
plant
Upstate
+0.1
-0.0
-0.1
+0.2
-0.4
carbon source
M9+glycerol
+0.1
-0.1
+0.3
-0.7
+0.2
plant
Norland
+0.0
+0.0
-0.1
-0.4
+0.2
carbon source
M9+polygalacturonate
+0.2
+0.3
+0.1
-0.4
-0.3
control
PDB
+0.2
-0.1
+0.2
+0.1
-0.6
carbon source
M9+glycerol
+0.1
-0.3
+0.4
+0.0
-0.2
plant
Atlantic
+0.1
-0.4
-0.2
+0.2
+0.4
control
PDB
+0.3
+0.1
+0.0
+0.4
-0.5
plant
Norland
+0.3
+0.4
-0.4
+0.1
-0.2
plant
Atlantic
+0.1
-0.2
-0.2
+0.2
+0.5
plant
Upstate
+0.2
-0.2
+0.1
+0.1
+0.2
carbon source
M9+glycerol
+0.2
+0.0
+0.3
-0.2
+0.3
carbon source
M9+sucrose
-0.0
+0.0
+0.3
+0.2
+0.3
control
LB
+0.0
+0.1
-0.1
-0.1
+0.7
plant
Norland
+0.2
+0.1
+0.2
+0.1
+0.2
plant
Atlantic
+0.2
+0.7
+0.1
-0.7
+0.6
carbon source
M9+glycerol
+0.2
+0.1
+0.2
+0.4
+0.4
plant
Atlantic
+0.2
+0.2
-0.5
+0.3
+1.6
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