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Cofit
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS11020 and HGI48_RS11025 are separated by 225 nucleotides
HGI48_RS11025 and HGI48_RS11030 are separated by 191 nucleotides
HGI48_RS11030 and HGI48_RS11035 are separated by 652 nucleotides
HGI48_RS11035 and HGI48_RS11040 are separated by 262 nucleotides
HGI48_RS11020: HGI48_RS11020 - hypothetical protein, at 2,391,050 to 2,391,220
_RS11020
HGI48_RS11025: HGI48_RS11025 - hypothetical protein, at 2,391,446 to 2,392,300
_RS11025
HGI48_RS11030: HGI48_RS11030 - IS3 family transposase, at 2,392,492 to 2,393,642
_RS11030
HGI48_RS11035: HGI48_RS11035 - DUF3732 domain-containing protein, at 2,394,295 to 2,394,903
_RS11035
HGI48_RS11040: HGI48_RS11040 - thermostable hemolysin, at 2,395,166 to 2,395,822
_RS11040
Group
Condition
HGI48
_RS11020
HGI48
_RS11025
HGI48
_RS11030
HGI48
_RS11035
HGI48
_RS11040
control
PDB
-2.0
-0.1
N.D.
-0.1
+0.1
control
PDB
-1.6
-0.1
N.D.
-0.1
-0.2
plant
Atlantic
-1.8
-0.1
N.D.
-0.0
+0.2
carbon source
M9+sucrose
-1.0
+0.1
N.D.
-0.3
-0.3
plant
Atlantic
-1.3
-0.2
N.D.
-0.1
+0.2
carbon source
M9+glycerol
-0.9
-0.1
N.D.
+0.1
+0.0
carbon source
M9+glycerol
-0.7
-0.0
N.D.
-0.1
+0.0
control
PDB
-0.6
-0.0
N.D.
-0.4
+0.2
carbon source
M9+sucrose
-1.1
+0.2
N.D.
+0.0
+0.0
plant
Norland
-0.5
-0.3
N.D.
+0.2
-0.1
control
PDB
-0.3
-0.3
N.D.
-0.2
+0.1
control
LB
-0.5
-0.2
N.D.
-0.1
+0.2
plant
Norland
-1.0
+0.0
N.D.
+0.1
+0.3
carbon source
M9+glycerol
-0.4
-0.2
N.D.
-0.0
+0.0
plant
Atlantic
-0.8
+0.2
N.D.
+0.2
-0.2
plant
Norland
-0.3
-0.1
N.D.
-0.1
-0.0
carbon source
M9+glycerol
-0.5
+0.0
N.D.
-0.1
+0.1
plant
Atlantic
-0.2
-0.0
N.D.
-0.2
-0.0
plant
Upstate
-0.3
-0.0
N.D.
+0.1
-0.1
control
PDB
-0.4
-0.1
N.D.
-0.2
+0.3
control
LB
-0.5
+0.0
N.D.
-0.0
+0.1
plant
Atlantic
+0.4
-0.0
N.D.
+0.0
-0.6
carbon source
M9+sucrose
-0.0
+0.1
N.D.
-0.3
+0.1
carbon source
M9+polygalacturonate
+0.3
+0.1
N.D.
-0.2
-0.2
plant
Atlantic
+0.4
-0.1
N.D.
+0.1
-0.0
control
LB
+0.4
+0.0
N.D.
-0.1
+0.1
carbon source
M9+polygalacturonate
-0.1
+0.2
N.D.
+0.1
+0.2
plant
Norland
+0.4
+0.1
N.D.
-0.0
+0.1
plant
Norland
+0.7
+0.1
N.D.
+0.1
-0.1
plant
Upstate
+1.0
-0.1
N.D.
+0.2
-0.1
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