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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS10995 and HGI48_RS11000 are separated by 305 nucleotides
HGI48_RS11000 and HGI48_RS11005 are separated by 160 nucleotides
HGI48_RS11005 and HGI48_RS11010 are separated by 56 nucleotides
HGI48_RS11010 and HGI48_RS11015 are separated by 15 nucleotides
HGI48_RS10995: HGI48_RS10995 - IS21 family transposase, at 2,384,149 to 2,385,172
_RS10995
HGI48_RS11000: HGI48_RS11000 - IS256 family transposase, at 2,385,478 to 2,386,686
_RS11000
HGI48_RS11005: HGI48_RS11005 - DNA integrity scanning protein DisA nucleotide-binding domain protein, at 2,386,847 to 2,388,592
_RS11005
HGI48_RS11010: HGI48_RS11010 - nucleotidyltransferase, at 2,388,649 to 2,389,542
_RS11010
HGI48_RS11015: HGI48_RS11015 - patatin-like phospholipase family protein, at 2,389,558 to 2,390,520
_RS11015
Group
Condition
HGI48
_RS10995
HGI48
_RS11000
HGI48
_RS11005
HGI48
_RS11010
HGI48
_RS11015
plant
Atlantic
-0.6
+0.0
-0.4
-0.0
-0.6
control
PDB
-0.8
-0.1
-0.2
-0.1
-0.1
plant
Norland
-1.7
+0.3
+0.1
+0.2
-0.0
plant
Norland
-1.0
+0.0
+0.0
+0.1
-0.1
carbon source
M9+sucrose
-1.0
-0.2
+0.2
+0.0
+0.2
control
PDB
-0.4
-0.2
-0.1
+0.0
-0.1
control
PDB
-0.1
-0.4
-0.1
-0.1
-0.2
plant
Atlantic
-1.3
+0.2
+0.1
+0.3
-0.1
carbon source
M9+glycerol
-0.8
-0.1
+0.1
-0.0
+0.1
carbon source
M9+glycerol
-0.7
-0.1
+0.0
-0.0
+0.1
carbon source
M9+sucrose
-1.0
-0.0
+0.2
-0.0
+0.2
carbon source
M9+sucrose
-0.5
-0.1
+0.0
-0.0
-0.0
plant
Upstate
-0.7
-0.0
+0.1
-0.1
+0.0
carbon source
M9+glycerol
-0.5
-0.2
-0.2
+0.1
+0.2
plant
Norland
-0.7
+0.1
+0.1
-0.2
+0.2
plant
Atlantic
-0.5
-0.2
+0.1
+0.2
-0.1
control
PDB
-0.0
-0.3
-0.1
-0.2
+0.2
carbon source
M9+polygalacturonate
+0.1
-0.3
-0.1
-0.1
-0.0
plant
Upstate
-0.7
+0.2
+0.1
+0.1
-0.1
plant
Norland
-0.4
-0.0
+0.0
-0.0
+0.3
carbon source
M9+glycerol
-0.3
-0.2
+0.1
+0.1
+0.1
control
PDB
+0.3
-0.3
-0.1
+0.0
-0.1
carbon source
M9+polygalacturonate
-0.1
-0.1
+0.3
-0.2
+0.2
plant
Upstate
-0.4
+0.2
+0.1
+0.1
+0.0
plant
Atlantic
+0.6
-0.1
+0.0
-0.1
-0.3
control
LB
-0.2
+0.2
-0.0
+0.2
-0.1
carbon source
M9+polygalacturonate
-0.1
+0.2
+0.2
-0.1
+0.2
control
LB
+0.4
-0.1
+0.1
+0.1
-0.1
plant
Atlantic
+0.4
+0.3
+0.2
+0.0
-0.0
plant
Atlantic
+0.5
+0.2
+0.1
+0.1
+0.0
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