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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS10975 and HGI48_RS10980 are separated by 214 nucleotides
HGI48_RS10980 and HGI48_RS10985 are separated by 74 nucleotides
HGI48_RS10985 and HGI48_RS10990 are separated by 45 nucleotides
HGI48_RS10990 and HGI48_RS10995 overlap by 4 nucleotides
HGI48_RS10975: HGI48_RS10975 - redox-regulated ATPase YchF, at 2,380,189 to 2,381,280
_RS10975
HGI48_RS10980: HGI48_RS10980 - tyrosine-type recombinase/integrase, at 2,381,495 to 2,382,676
_RS10980
HGI48_RS10985: HGI48_RS10985 - Fic family protein, at 2,382,751 to 2,383,323
_RS10985
HGI48_RS10990: HGI48_RS10990 - AAA family ATPase, at 2,383,369 to 2,384,152
_RS10990
HGI48_RS10995: HGI48_RS10995 - IS21 family transposase, at 2,384,149 to 2,385,172
_RS10995
Group
Condition
HGI48
_RS10975
HGI48
_RS10980
HGI48
_RS10985
HGI48
_RS10990
HGI48
_RS10995
plant
Upstate
-2.0
+0.1
+0.1
-0.9
-0.7
plant
Upstate
-1.6
-0.3
+0.1
-0.6
-0.7
plant
Norland
-0.9
+0.0
-0.0
-0.4
-1.7
plant
Norland
-1.4
-0.0
-0.2
-0.9
-0.4
plant
Norland
-1.1
+0.2
-0.0
-1.3
-0.0
plant
Atlantic
-1.3
-0.4
-0.4
-0.6
+0.6
plant
Atlantic
-1.3
-0.1
-0.1
-1.1
+0.5
plant
Atlantic
-1.1
-0.1
+0.6
-0.1
-1.3
plant
Atlantic
-1.1
-0.0
+0.0
-0.4
-0.5
plant
Upstate
-1.3
+0.0
+0.2
-0.5
-0.3
carbon source
M9+glycerol
-0.5
-0.0
+0.1
-0.6
-0.8
carbon source
M9+sucrose
-0.1
-0.2
-0.0
-0.4
-1.0
carbon source
M9+glycerol
-0.5
-0.1
+0.3
-0.8
-0.5
carbon source
M9+sucrose
-1.1
+0.5
-0.1
+0.1
-1.0
control
PDB
-0.9
-0.1
-0.0
-0.2
-0.4
carbon source
M9+sucrose
-0.8
+0.0
+0.1
-0.4
-0.5
plant
Upstate
-0.9
-0.3
+0.3
-0.2
-0.4
plant
Norland
-1.0
+0.2
-0.1
-0.8
+0.1
plant
Norland
-0.5
-0.0
+0.2
-0.2
-1.0
plant
Atlantic
-1.3
+0.2
-0.2
-0.5
+0.4
plant
Atlantic
-0.4
-0.0
-0.3
+0.0
-0.6
plant
Norland
-0.9
+0.0
+0.2
+0.0
-0.7
carbon source
M9+glycerol
+0.0
-0.2
+0.1
-0.9
-0.3
control
PDB
-0.3
-0.0
-0.6
-0.3
-0.1
control
LB
-0.7
+0.3
+0.1
-0.7
-0.3
control
LB
-0.5
+0.2
-0.1
-0.3
-0.4
control
LB
-0.8
+0.0
-0.0
-0.2
-0.2
plant
Upstate
-0.5
+0.1
+0.1
-0.6
-0.1
control
PDB
-0.2
-0.1
-0.1
+0.5
-0.8
control
LB
-0.4
+0.1
-0.1
-0.3
+0.4
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