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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS10655 and HGI48_RS10660 are separated by 3 nucleotides
HGI48_RS10660 and HGI48_RS10665 are separated by 236 nucleotides
HGI48_RS10665 and HGI48_RS10670 are separated by 138 nucleotides
HGI48_RS10670 and HGI48_RS10675 are separated by 116 nucleotides
HGI48_RS10655: HGI48_RS10655 - class II fumarate hydratase, at 2,301,309 to 2,302,706
_RS10655
HGI48_RS10660: HGI48_RS10660 - DNA replication terminus site-binding protein, at 2,302,710 to 2,303,636
_RS10660
HGI48_RS10665: HGI48_RS10665 - MFS transporter, at 2,303,873 to 2,305,123
_RS10665
HGI48_RS10670: HGI48_RS10670 - LysR family transcriptional regulator, at 2,305,262 to 2,306,176
_RS10670
HGI48_RS10675: HGI48_RS10675 - ROK family transcriptional regulator, at 2,306,293 to 2,307,510
_RS10675
Group
Condition
HGI48
_RS10655
HGI48
_RS10660
HGI48
_RS10665
HGI48
_RS10670
HGI48
_RS10675
plant
Atlantic
-1.0
+0.2
-0.1
-0.1
+0.0
control
PDB
-0.1
-0.5
+0.2
-0.3
-0.2
plant
Norland
-0.6
+0.2
+0.2
-0.2
-0.0
plant
Norland
-0.0
+0.0
+0.0
-0.3
-0.2
plant
Upstate
-0.2
+0.0
+0.0
-0.4
+0.1
control
PDB
-0.2
-0.4
+0.0
+0.1
-0.0
plant
Atlantic
-0.8
+0.3
+0.1
-0.2
+0.2
carbon source
M9+glycerol
-0.4
+0.1
+0.1
-0.1
-0.1
plant
Upstate
-0.6
+0.2
-0.0
+0.0
+0.1
plant
Norland
+0.2
-0.3
+0.1
-0.1
-0.1
carbon source
M9+sucrose
-0.1
-0.1
+0.2
-0.1
-0.1
plant
Norland
-0.2
-0.2
-0.0
+0.1
+0.2
plant
Norland
-0.5
+0.1
+0.4
-0.1
-0.1
plant
Upstate
-0.5
-0.0
+0.2
+0.1
+0.2
control
PDB
-0.1
-0.1
+0.0
-0.2
+0.2
carbon source
M9+glycerol
-0.3
-0.0
+0.0
-0.1
+0.2
plant
Atlantic
+0.2
-0.2
+0.0
+0.1
-0.2
control
PDB
+0.2
-0.3
+0.1
+0.0
-0.1
carbon source
M9+glycerol
-0.0
-0.5
+0.1
+0.2
+0.2
control
LB
-0.3
-0.1
+0.0
+0.3
+0.1
plant
Atlantic
+0.4
-0.5
-0.3
+0.2
+0.2
carbon source
M9+polygalacturonate
+0.1
+0.3
-0.1
-0.4
+0.2
carbon source
M9+sucrose
+0.3
+0.2
+0.1
+0.1
-0.4
carbon source
M9+glycerol
+0.2
-0.1
-0.0
-0.0
+0.3
plant
Upstate
+0.4
+0.2
-0.1
-0.4
+0.3
carbon source
M9+polygalacturonate
+0.2
+0.5
+0.0
-0.4
+0.2
plant
Atlantic
-0.0
+0.3
-0.1
+0.3
+0.2
plant
Upstate
+0.2
+0.1
+0.2
-0.1
+0.2
carbon source
M9+polygalacturonate
+0.2
+0.2
+0.0
-0.3
+0.6
carbon source
M9+sucrose
+0.4
+0.0
+0.4
+0.4
+0.1
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