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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS10645 and HGI48_RS10650 are separated by 58 nucleotides
HGI48_RS10650 and HGI48_RS10655 are separated by 177 nucleotides
HGI48_RS10655 and HGI48_RS10660 are separated by 3 nucleotides
HGI48_RS10660 and HGI48_RS10665 are separated by 236 nucleotides
HGI48_RS10645: HGI48_RS10645 - YdgA family protein, at 2,298,326 to 2,299,888
_RS10645
HGI48_RS10650: HGI48_RS10650 - mannose-6-phosphate isomerase, at 2,299,947 to 2,301,131
_RS10650
HGI48_RS10655: HGI48_RS10655 - class II fumarate hydratase, at 2,301,309 to 2,302,706
_RS10655
HGI48_RS10660: HGI48_RS10660 - DNA replication terminus site-binding protein, at 2,302,710 to 2,303,636
_RS10660
HGI48_RS10665: HGI48_RS10665 - MFS transporter, at 2,303,873 to 2,305,123
_RS10665
Group
Condition
HGI48
_RS10645
HGI48
_RS10650
HGI48
_RS10655
HGI48
_RS10660
HGI48
_RS10665
plant
Upstate
-0.4
-1.3
-0.2
+0.0
+0.0
plant
Atlantic
+0.4
-0.7
-1.0
+0.2
-0.1
control
LB
-0.3
-0.4
-0.3
-0.1
+0.0
plant
Atlantic
-0.4
-0.4
+0.4
-0.5
-0.3
plant
Upstate
+0.1
-0.7
-0.6
+0.2
-0.0
control
PDB
-0.4
-0.2
-0.1
-0.5
+0.2
control
PDB
-0.5
-0.3
+0.1
-0.0
-0.0
plant
Upstate
+0.1
-0.4
-0.5
-0.0
+0.2
plant
Atlantic
+0.2
-1.0
-0.0
+0.3
-0.1
plant
Norland
+0.0
-0.3
-0.6
+0.2
+0.2
control
PDB
-0.2
+0.2
-0.2
-0.4
+0.0
plant
Upstate
-0.0
-0.9
+0.4
+0.2
-0.1
control
PDB
-0.3
-0.0
+0.2
-0.3
+0.1
plant
Norland
-0.3
-0.1
-0.5
+0.1
+0.4
plant
Norland
+0.3
-0.4
+0.2
-0.3
+0.1
control
LB
+0.1
+0.3
-0.1
-0.3
+0.0
plant
Atlantic
+0.2
+0.3
-0.8
+0.3
+0.1
carbon source
M9+glycerol
+0.2
+1.0
-0.0
-0.5
+0.1
plant
Atlantic
+0.4
+0.3
+0.2
-0.2
+0.0
carbon source
M9+glycerol
+0.0
+1.1
-0.2
-0.0
+0.0
carbon source
M9+glycerol
+0.1
+0.9
+0.2
-0.1
-0.0
carbon source
M9+glycerol
-0.0
+1.5
+0.0
-0.3
-0.0
carbon source
M9+glycerol
+0.0
+1.6
-0.3
-0.0
+0.0
carbon source
M9+sucrose
+0.3
+1.4
-0.1
-0.1
+0.2
carbon source
M9+glycerol
+0.3
+2.0
-0.4
+0.1
+0.1
carbon source
M9+sucrose
+0.3
+1.2
+0.3
+0.2
+0.1
carbon source
M9+polygalacturonate
-0.0
+1.6
+0.2
+0.5
+0.0
carbon source
M9+polygalacturonate
+0.2
+1.8
+0.1
+0.3
-0.1
carbon source
M9+sucrose
+0.2
+2.4
+0.4
+0.0
+0.4
carbon source
M9+polygalacturonate
+0.4
+3.8
+0.2
+0.2
+0.0
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