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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS10495 and HGI48_RS10500 are separated by 190 nucleotides
HGI48_RS10500 and HGI48_RS10505 are separated by 66 nucleotides
HGI48_RS10505 and HGI48_RS10510 are separated by 21 nucleotides
HGI48_RS10510 and HGI48_RS10515 are separated by 282 nucleotides
HGI48_RS10495: HGI48_RS10495 - threonylcarbamoyl-AMP synthase, at 2,264,322 to 2,264,942
_RS10495
HGI48_RS10500: HGI48_RS10500 - 23S rRNA pseudouridine(2605) synthase RluB, at 2,265,133 to 2,266,023
_RS10500
HGI48_RS10505: HGI48_RS10505 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 2,266,090 to 2,266,680
_RS10505
HGI48_RS10510: HGI48_RS10510 - YciK family oxidoreductase, at 2,266,702 to 2,267,463
_RS10510
HGI48_RS10515: HGI48_RS10515 - protease SohB, at 2,267,746 to 2,268,792
_RS10515
Group
Condition
HGI48
_RS10495
HGI48
_RS10500
HGI48
_RS10505
HGI48
_RS10510
HGI48
_RS10515
carbon source
M9+glycerol
-0.1
-1.6
-0.4
-0.7
-0.0
carbon source
M9+glycerol
-0.1
-0.6
-0.6
-0.3
-0.6
control
LB
-0.1
-0.7
-0.0
-0.9
-0.2
plant
Norland
-0.4
-0.6
-0.5
-0.2
-0.2
plant
Atlantic
+0.1
-0.8
-0.6
-0.3
-0.2
plant
Upstate
-0.3
-0.7
-0.3
-0.4
-0.0
carbon source
M9+glycerol
+0.0
-1.1
-0.5
+0.1
-0.1
carbon source
M9+polygalacturonate
-0.1
-1.9
-0.0
+0.6
-0.1
plant
Upstate
-0.1
-1.0
+0.0
-0.2
-0.2
plant
Upstate
-0.2
-0.8
+0.0
-0.2
-0.2
plant
Upstate
-0.2
-0.5
-0.2
-0.3
-0.2
plant
Norland
-0.3
-0.8
-0.3
+0.0
-0.0
plant
Atlantic
+0.3
-1.4
-0.3
+0.2
-0.1
plant
Norland
-0.1
-0.9
+0.1
-0.4
+0.0
carbon source
M9+polygalacturonate
+0.2
-1.5
+0.4
-0.6
+0.3
control
PDB
-0.2
-0.5
-0.3
+0.2
-0.4
plant
Atlantic
+0.5
-1.8
-0.3
+0.3
+0.0
carbon source
M9+glycerol
+0.4
-0.5
-0.4
-0.6
-0.2
carbon source
M9+polygalacturonate
-0.2
-1.6
+0.4
+0.4
-0.2
plant
Norland
+0.2
-1.0
-0.0
-0.3
-0.0
control
PDB
-0.0
-0.6
-0.2
+0.3
-0.5
plant
Atlantic
+0.1
-0.7
+0.0
-0.5
-0.1
carbon source
M9+glycerol
+0.2
-0.4
-0.2
-0.5
-0.2
carbon source
M9+glycerol
-0.0
-0.9
+0.2
+0.0
-0.3
plant
Norland
-0.2
-0.7
+0.3
-0.3
-0.0
plant
Atlantic
+0.1
-0.9
+0.2
+0.0
-0.4
control
LB
+0.2
-0.9
+0.1
-0.2
-0.1
control
PDB
-0.3
-0.7
-0.2
+0.6
-0.0
carbon source
M9+sucrose
-0.2
-1.6
+0.3
+1.1
+0.3
plant
Atlantic
-0.0
-0.7
-0.1
+0.9
+0.3
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