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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS10465 and HGI48_RS10470 are separated by 17 nucleotides
HGI48_RS10470 and HGI48_RS10475 are separated by 8 nucleotides
HGI48_RS10475 and HGI48_RS10480 are separated by 19 nucleotides
HGI48_RS10480 and HGI48_RS10485 overlap by 1 nucleotides
HGI48_RS10465: HGI48_RS10465 - tryptophan synthase subunit beta, at 2,257,225 to 2,258,415
_RS10465
HGI48_RS10470: HGI48_RS10470 - bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF, at 2,258,433 to 2,259,818
_RS10470
HGI48_RS10475: HGI48_RS10475 - anthranilate phosphoribosyltransferase, at 2,259,827 to 2,260,825
_RS10475
HGI48_RS10480: HGI48_RS10480 - gamma-glutamyl-gamma-aminobutyrate hydrolase family protein, at 2,260,845 to 2,261,423
_RS10480
HGI48_RS10485: HGI48_RS10485 - anthranilate synthase component 1, at 2,261,423 to 2,262,985
_RS10485
Group
Condition
HGI48
_RS10465
HGI48
_RS10470
HGI48
_RS10475
HGI48
_RS10480
HGI48
_RS10485
carbon source
M9+polygalacturonate
-1.5
-2.5
-2.6
-2.9
-2.0
plant
Atlantic
-1.7
-2.0
-2.1
-3.0
-2.5
carbon source
M9+sucrose
-1.3
-2.3
-2.2
-2.2
-2.5
control
PDB
-1.6
-2.2
-2.1
-2.4
-2.0
plant
Atlantic
-1.3
-2.7
-1.8
-2.4
-2.0
carbon source
M9+sucrose
-1.7
-2.6
-1.9
-2.0
-1.9
carbon source
M9+polygalacturonate
-1.4
-2.2
-2.7
-1.7
-1.9
carbon source
M9+sucrose
-1.6
-2.3
-1.9
-1.9
-2.1
plant
Atlantic
-1.9
-1.9
-1.0
-2.8
-2.1
carbon source
M9+polygalacturonate
-2.0
-1.9
-2.2
-2.0
-1.5
control
PDB
-1.5
-1.7
-1.7
-2.1
-1.7
control
PDB
-1.3
-2.0
-1.5
-2.4
-1.3
plant
Atlantic
-1.2
-1.7
-1.8
-2.4
-1.5
plant
Atlantic
-1.3
-1.1
-1.0
-3.1
-2.1
control
PDB
-1.3
-2.0
-1.6
-1.9
-1.7
control
PDB
-1.4
-1.9
-1.3
-1.8
-1.7
control
PDB
-1.7
-1.7
-1.0
-2.0
-1.2
plant
Norland
-1.2
-1.2
-1.0
-2.0
-1.5
plant
Atlantic
-1.4
-1.0
-1.8
-1.1
-0.9
carbon source
M9+glycerol
-1.3
-1.9
-1.0
-0.9
-1.0
plant
Norland
-1.1
-0.8
-0.8
-2.0
-1.3
plant
Norland
-1.0
-0.9
-0.9
-1.3
-1.3
plant
Norland
-1.0
-0.8
-0.3
-1.3
-1.2
plant
Upstate
-1.2
-0.7
-0.6
-1.2
-0.8
plant
Upstate
-1.0
-0.7
-0.4
-1.5
-0.7
plant
Norland
-0.9
-0.6
-0.5
-1.2
-0.6
carbon source
M9+glycerol
-1.2
-1.1
-0.5
-0.4
-0.6
plant
Norland
-0.7
-0.5
-0.5
-1.3
-0.7
carbon source
M9+glycerol
-1.4
-1.2
-0.5
+0.1
-0.4
carbon source
M9+glycerol
-1.4
-1.2
-0.4
-0.0
-0.3
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