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Gene
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Cofit
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS10320 and HGI48_RS10325 are separated by 343 nucleotides
HGI48_RS10325 and HGI48_RS10330 are separated by 193 nucleotides
HGI48_RS10330 and HGI48_RS10335 are separated by 169 nucleotides
HGI48_RS10335 and HGI48_RS10340 are separated by 78 nucleotides
HGI48_RS10320: HGI48_RS10320 - exodeoxyribonuclease III, at 2,226,852 to 2,227,658
_RS10320
HGI48_RS10325: HGI48_RS10325 - trimeric intracellular cation channel family protein, at 2,228,002 to 2,228,622
_RS10325
HGI48_RS10330: HGI48_RS10330 - tRNA-Tyr, at 2,228,816 to 2,228,900
_RS10330
HGI48_RS10335: HGI48_RS10335 - formyltetrahydrofolate deformylase, at 2,229,070 to 2,229,921
_RS10335
HGI48_RS10340: HGI48_RS10340 - YchJ family protein, at 2,230,000 to 2,230,467
_RS10340
Group
Condition
HGI48
_RS10320
HGI48
_RS10325
HGI48
_RS10330
HGI48
_RS10335
HGI48
_RS10340
carbon source
M9+polygalacturonate
-1.7
+0.0
N.D.
-1.8
-0.6
carbon source
M9+polygalacturonate
-0.3
-0.0
N.D.
-1.6
-0.5
plant
Upstate
+0.2
-0.0
N.D.
-1.9
-0.6
carbon source
M9+polygalacturonate
+0.2
-0.1
N.D.
-1.8
-0.6
carbon source
M9+sucrose
-0.9
-0.0
N.D.
-0.8
-0.3
plant
Atlantic
+0.0
-0.2
N.D.
-1.8
-0.1
plant
Norland
+0.2
+0.1
N.D.
-1.8
-0.4
plant
Upstate
-0.4
+0.0
N.D.
-1.2
-0.4
plant
Norland
-0.7
-0.1
N.D.
-1.2
+0.1
carbon source
M9+sucrose
-1.1
-0.0
N.D.
-0.6
-0.1
plant
Upstate
-0.5
+0.3
N.D.
-1.2
-0.3
plant
Atlantic
-0.1
-0.1
N.D.
-0.8
-0.6
plant
Norland
+0.2
-0.1
N.D.
-1.1
-0.4
plant
Atlantic
-0.6
+0.3
N.D.
-0.8
-0.1
plant
Atlantic
+0.1
-0.1
N.D.
-1.1
-0.1
control
PDB
-0.9
-0.3
N.D.
-0.1
+0.2
plant
Atlantic
-0.6
+0.4
N.D.
-1.6
+0.9
plant
Norland
+0.3
+0.0
N.D.
-1.3
+0.0
plant
Atlantic
+0.2
+0.0
N.D.
-1.0
+0.0
plant
Norland
+0.3
+0.2
N.D.
-1.0
-0.2
carbon source
M9+glycerol
-0.4
-0.0
N.D.
-0.7
+0.3
carbon source
M9+sucrose
-0.7
-0.2
N.D.
-0.0
+0.1
plant
Upstate
+0.8
-0.1
N.D.
-1.3
+0.1
plant
Norland
+0.4
+0.2
N.D.
-1.1
+0.1
control
LB
-0.6
-0.1
N.D.
+0.2
+0.2
carbon source
M9+glycerol
-0.2
-0.3
N.D.
+0.1
+0.3
plant
Upstate
+0.9
-0.0
N.D.
-1.2
+0.2
carbon source
M9+glycerol
-0.4
-0.1
N.D.
+0.0
+0.4
control
PDB
+0.3
-0.4
N.D.
+0.3
+0.2
control
PDB
+0.5
-0.1
N.D.
+0.3
+0.1
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