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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS10300 and HGI48_RS10305 are separated by 266 nucleotides
HGI48_RS10305 and HGI48_RS10310 are separated by 84 nucleotides
HGI48_RS10310 and HGI48_RS10315 are separated by 5 nucleotides
HGI48_RS10315 and HGI48_RS10320 are separated by 45 nucleotides
HGI48_RS10300: HGI48_RS10300 - signal peptide peptidase SppA, at 2,221,733 to 2,223,577
_RS10300
HGI48_RS10305: HGI48_RS10305 - NAD(P)H nitroreductase, at 2,223,844 to 2,224,395
_RS10305
HGI48_RS10310: HGI48_RS10310 - DNA topoisomerase III, at 2,224,480 to 2,226,405
_RS10310
HGI48_RS10315: HGI48_RS10315 - DUF1496 domain-containing protein, at 2,226,411 to 2,226,806
_RS10315
HGI48_RS10320: HGI48_RS10320 - exodeoxyribonuclease III, at 2,226,852 to 2,227,658
_RS10320
Group
Condition
HGI48
_RS10300
HGI48
_RS10305
HGI48
_RS10310
HGI48
_RS10315
HGI48
_RS10320
control
PDB
-0.4
-0.5
+0.0
-0.8
-0.9
carbon source
M9+polygalacturonate
-0.0
+0.1
+0.2
-0.1
-1.7
carbon source
M9+glycerol
-0.3
-0.6
-0.0
+0.1
-0.6
carbon source
M9+polygalacturonate
-0.1
-0.2
-0.4
-0.9
+0.2
carbon source
M9+glycerol
+0.2
-0.3
-0.3
-0.3
-0.4
carbon source
M9+glycerol
+0.2
-0.6
-0.1
-0.4
-0.2
carbon source
M9+polygalacturonate
-0.4
-0.2
+0.0
-0.1
-0.3
carbon source
M9+sucrose
+0.1
+0.2
+0.1
-0.4
-0.9
control
LB
-0.2
-0.0
+0.1
+0.0
-0.6
carbon source
M9+glycerol
+0.1
-0.2
+0.1
-0.3
-0.4
plant
Norland
-0.2
-0.3
+0.1
+0.4
-0.7
carbon source
M9+glycerol
-0.0
-0.0
-0.4
+0.1
-0.4
plant
Atlantic
-0.2
-0.6
+0.1
+0.1
+0.1
carbon source
M9+glycerol
-0.1
-0.2
+0.1
+0.2
-0.2
carbon source
M9+sucrose
+0.1
+0.3
+0.2
+0.3
-1.1
carbon source
M9+sucrose
+0.3
-0.2
+0.2
+0.0
-0.7
plant
Upstate
-0.2
-0.3
-0.0
+0.8
-0.5
plant
Atlantic
-0.1
+0.2
+0.4
+0.0
-0.6
plant
Atlantic
-0.2
+0.0
+0.7
+0.0
-0.6
control
PDB
-0.2
-0.3
+0.2
+0.3
-0.0
control
PDB
-0.2
+0.1
+0.0
+0.4
-0.3
plant
Norland
-0.2
+0.1
+0.0
-0.2
+0.3
control
PDB
-0.2
-0.1
-0.0
+0.1
+0.5
plant
Upstate
-0.2
+0.6
+0.1
+0.2
-0.4
plant
Atlantic
-0.1
+0.3
-0.1
+0.2
-0.1
plant
Norland
-0.3
+0.1
+0.0
+0.2
+0.4
control
PDB
-0.2
-0.1
+0.1
+0.3
+0.3
control
LB
-0.1
-0.0
+0.2
+0.0
+0.4
plant
Upstate
-0.1
-0.2
+0.4
+0.1
+0.9
plant
Upstate
+0.0
-0.3
+0.1
+0.5
+0.8
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