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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS10045 and HGI48_RS10050 are separated by 702 nucleotides
HGI48_RS10050 and HGI48_RS10055 are separated by 246 nucleotides
HGI48_RS10055 and HGI48_RS10060 are separated by 290 nucleotides
HGI48_RS10060 and HGI48_RS10065 are separated by 98 nucleotides
HGI48_RS10045: HGI48_RS10045 - arginine--tRNA ligase, at 2,168,541 to 2,170,271
_RS10045
HGI48_RS10050: HGI48_RS10050 - VOC family protein, at 2,170,974 to 2,171,546
_RS10050
HGI48_RS10055: HGI48_RS10055 - copper homeostasis protein CutC, at 2,171,793 to 2,172,557
_RS10055
HGI48_RS10060: HGI48_RS10060 - hypothetical protein, at 2,172,848 to 2,173,144
_RS10060
HGI48_RS10065: HGI48_RS10065 - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 2,173,243 to 2,174,214
_RS10065
Group
Condition
HGI48
_RS10045
HGI48
_RS10050
HGI48
_RS10055
HGI48
_RS10060
HGI48
_RS10065
control
PDB
N.D.
-1.4
-0.1
-0.5
-0.1
plant
Norland
N.D.
-0.9
+0.2
+0.4
-0.7
control
LB
N.D.
-0.6
-0.0
-0.1
-0.3
plant
Atlantic
N.D.
-2.6
+0.5
+0.3
+0.9
plant
Norland
N.D.
-1.2
+0.4
+0.1
-0.1
control
PDB
N.D.
-0.4
+0.1
-0.1
-0.4
control
PDB
N.D.
-0.6
+0.2
+0.1
-0.3
control
PDB
N.D.
+0.2
+0.1
-0.7
+0.2
plant
Atlantic
N.D.
-0.8
+0.4
+0.6
-0.1
plant
Atlantic
N.D.
-0.6
+0.5
-0.1
+0.4
plant
Norland
N.D.
-0.1
+0.1
+0.7
-0.3
plant
Upstate
N.D.
-0.6
+0.4
+0.4
+0.2
carbon source
M9+glycerol
N.D.
-0.8
+0.1
+0.1
+1.0
carbon source
M9+glycerol
N.D.
-0.4
+0.1
+0.6
+0.2
plant
Norland
N.D.
-0.3
+0.2
+0.4
+0.2
carbon source
M9+glycerol
N.D.
-0.5
+0.1
+0.3
+0.7
carbon source
M9+glycerol
N.D.
-0.3
+0.5
-0.1
+0.6
carbon source
M9+sucrose
N.D.
+0.1
-0.1
-0.9
+1.6
plant
Atlantic
N.D.
-0.0
+0.7
+0.6
-0.6
plant
Norland
N.D.
+0.4
+0.7
+0.3
-0.7
plant
Upstate
N.D.
-0.1
-0.1
+0.6
+0.3
carbon source
M9+polygalacturonate
N.D.
+0.0
+0.5
-0.7
+1.0
control
PDB
N.D.
+0.6
-0.1
+0.1
+0.3
plant
Upstate
N.D.
+0.3
+0.3
+0.2
+0.4
carbon source
M9+sucrose
N.D.
-0.5
-0.1
+0.4
+1.6
carbon source
M9+polygalacturonate
N.D.
+0.4
+0.6
-0.8
+1.4
carbon source
M9+sucrose
N.D.
+1.0
+0.2
+0.1
+0.4
carbon source
M9+polygalacturonate
N.D.
+1.3
+0.2
-0.8
+1.0
plant
Upstate
N.D.
+0.5
+0.1
+1.2
-0.0
carbon source
M9+glycerol
N.D.
+0.5
+0.3
+0.1
+1.0
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