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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS09750 and HGI48_RS09755 are separated by 161 nucleotides
HGI48_RS09755 and HGI48_RS09760 are separated by 259 nucleotides
HGI48_RS09760 and HGI48_RS09765 are separated by 159 nucleotides
HGI48_RS09765 and HGI48_RS09770 are separated by 450 nucleotides
HGI48_RS09750: HGI48_RS09750 - ATP phosphoribosyltransferase, at 2,105,213 to 2,106,112
_RS09750
HGI48_RS09755: HGI48_RS09755 - his operon leader peptide, at 2,106,274 to 2,106,321
_RS09755
HGI48_RS09760: HGI48_RS09760 - SDR family oxidoreductase, at 2,106,581 to 2,107,402
_RS09760
HGI48_RS09765: HGI48_RS09765 - HAMP domain-containing protein, at 2,107,562 to 2,109,526
_RS09765
HGI48_RS09770: HGI48_RS09770 - response regulator, at 2,109,977 to 2,110,702
_RS09770
Group
Condition
HGI48
_RS09750
HGI48
_RS09755
HGI48
_RS09760
HGI48
_RS09765
HGI48
_RS09770
carbon source
M9+polygalacturonate
-2.9
N.D.
+0.0
-0.0
+0.1
carbon source
M9+polygalacturonate
-2.8
N.D.
+0.3
+0.1
-0.1
control
PDB
-1.7
N.D.
-0.1
+0.2
-0.1
carbon source
M9+glycerol
-1.1
N.D.
-0.3
-0.0
-0.3
carbon source
M9+polygalacturonate
-1.9
N.D.
+0.3
+0.1
-0.1
carbon source
M9+glycerol
-1.2
N.D.
-0.4
+0.1
+0.2
carbon source
M9+glycerol
-0.8
N.D.
-0.2
-0.0
-0.1
control
PDB
-0.9
N.D.
+0.1
-0.2
-0.1
carbon source
M9+glycerol
-0.5
N.D.
-0.4
-0.0
+0.0
control
PDB
-0.6
N.D.
-0.4
+0.1
-0.0
plant
Upstate
-0.6
N.D.
-0.4
-0.0
+0.1
control
PDB
-0.7
N.D.
-0.0
+0.2
-0.2
plant
Atlantic
-0.1
N.D.
+0.0
+0.0
-0.7
control
PDB
-0.1
N.D.
-0.6
+0.3
-0.1
carbon source
M9+glycerol
-0.4
N.D.
-0.2
-0.1
+0.2
plant
Atlantic
-0.7
N.D.
-0.1
-0.2
+0.4
control
LB
-0.5
N.D.
-0.1
-0.1
+0.1
plant
Norland
-0.2
N.D.
-0.3
-0.1
-0.1
plant
Norland
-0.0
N.D.
-0.5
-0.1
+0.2
control
PDB
-0.5
N.D.
+0.2
-0.0
-0.1
plant
Upstate
-0.2
N.D.
-0.2
-0.1
+0.1
plant
Upstate
-0.3
N.D.
-0.2
+0.1
+0.1
plant
Upstate
-0.3
N.D.
-0.1
+0.0
+0.2
plant
Atlantic
+0.4
N.D.
-0.4
+0.1
-0.2
control
LB
-0.2
N.D.
-0.1
+0.0
+0.3
carbon source
M9+sucrose
-0.4
N.D.
+0.1
+0.2
+0.2
plant
Atlantic
+0.1
N.D.
-0.2
+0.2
+0.0
plant
Atlantic
+0.0
N.D.
-0.3
+0.1
+0.3
plant
Norland
+0.2
N.D.
-0.1
+0.2
-0.0
plant
Upstate
-0.2
N.D.
-0.3
+0.2
+0.8
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