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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS09300 and HGI48_RS09305 are separated by 137 nucleotides
HGI48_RS09305 and HGI48_RS09310 are separated by 2 nucleotides
HGI48_RS09310 and HGI48_RS09315 overlap by 23 nucleotides
HGI48_RS09315 and HGI48_RS09320 overlap by 4 nucleotides
HGI48_RS09300: HGI48_RS09300 - 3-oxoacyl-ACP synthase, at 1,997,833 to 1,998,858
_RS09300
HGI48_RS09305: HGI48_RS09305 - HAD-IIIC family phosphatase, at 1,998,996 to 2,000,744
_RS09305
HGI48_RS09310: HGI48_RS09310 - acyl carrier protein, at 2,000,747 to 2,000,986
_RS09310
HGI48_RS09315: HGI48_RS09315 - 2-oxo acid dehydrogenase subunit E2, at 2,000,964 to 2,001,710
_RS09315
HGI48_RS09320: HGI48_RS09320 - alpha/beta hydrolase, at 2,001,707 to 2,002,780
_RS09320
Group
Condition
HGI48
_RS09300
HGI48
_RS09305
HGI48
_RS09310
HGI48
_RS09315
HGI48
_RS09320
plant
Atlantic
+0.1
+0.2
-2.5
+0.3
+0.3
plant
Upstate
+0.1
-0.0
-0.9
-0.3
-0.0
plant
Norland
-0.1
-0.0
-0.4
-0.3
-0.2
plant
Atlantic
-0.6
-0.2
+0.3
-0.5
+0.1
carbon source
M9+glycerol
-0.0
+0.3
-1.5
+0.3
+0.0
control
LB
+0.1
+0.2
-1.1
-0.2
+0.1
plant
Upstate
+0.2
+0.4
-1.4
-0.0
+0.1
plant
Atlantic
+0.2
+0.5
-1.5
-0.2
+0.1
plant
Norland
+0.2
-0.0
-0.8
-0.0
-0.1
plant
Norland
+0.2
+0.3
-1.1
+0.0
-0.1
plant
Upstate
-0.0
+0.3
-1.0
+0.1
-0.0
control
LB
-0.4
+0.4
-0.2
-0.1
-0.2
control
PDB
-0.9
+0.2
-0.3
+0.5
-0.1
plant
Norland
+0.4
+0.1
-0.5
-0.1
-0.3
plant
Atlantic
-0.0
+0.2
-0.5
-0.2
+0.1
plant
Norland
-0.5
+0.3
-0.1
-0.0
-0.0
control
LB
+0.1
+0.3
-0.6
-0.0
-0.0
carbon source
M9+sucrose
-0.4
+0.0
+0.4
+0.1
+0.1
plant
Norland
+0.2
+0.1
+0.4
-0.1
-0.2
carbon source
M9+glycerol
+0.5
-0.3
-0.3
+0.3
+0.2
control
PDB
+0.2
+0.2
-0.4
+0.3
+0.1
carbon source
M9+polygalacturonate
-0.6
+0.4
+0.4
+0.5
-0.1
carbon source
M9+glycerol
+0.5
+0.3
-0.5
+0.3
-0.1
control
LB
+0.3
+0.3
-0.1
+0.2
-0.2
control
PDB
+0.3
+0.5
-0.2
+0.2
+0.0
carbon source
M9+glycerol
+0.4
+0.1
+0.2
+0.3
-0.1
control
PDB
-0.4
+0.6
+0.2
+0.3
+0.1
plant
Upstate
+0.7
+0.6
-0.6
+0.1
+0.1
control
PDB
-0.0
+0.5
+0.4
+0.2
-0.0
carbon source
M9+polygalacturonate
+0.6
+0.2
+0.9
-0.2
-0.0
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