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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS09275 and HGI48_RS09280 are separated by 131 nucleotides
HGI48_RS09280 and HGI48_RS09285 are separated by 104 nucleotides
HGI48_RS09285 and HGI48_RS09290 are separated by 163 nucleotides
HGI48_RS09290 and HGI48_RS09295 are separated by 80 nucleotides
HGI48_RS09275: HGI48_RS09275 - deoxyribonuclease IV, at 1,991,125 to 1,992,000
_RS09275
HGI48_RS09280: HGI48_RS09280 - YeiH family putative sulfate export transporter, at 1,992,132 to 1,993,214
_RS09280
HGI48_RS09285: HGI48_RS09285 - LysR family transcriptional regulator, at 1,993,319 to 1,994,197
_RS09285
HGI48_RS09290: HGI48_RS09290 - amino acid permease, at 1,994,361 to 1,995,833
_RS09290
HGI48_RS09295: HGI48_RS09295 - sugar transporter, at 1,995,914 to 1,997,101
_RS09295
Group
Condition
HGI48
_RS09275
HGI48
_RS09280
HGI48
_RS09285
HGI48
_RS09290
HGI48
_RS09295
carbon source
M9+polygalacturonate
-0.7
-0.9
-0.2
-0.1
+0.1
control
PDB
-0.2
-0.1
-0.2
-0.2
-0.8
control
PDB
-0.2
+0.1
-0.1
-0.2
-1.0
carbon source
M9+glycerol
-0.3
-0.5
-0.5
+0.1
-0.3
control
PDB
+0.1
-0.2
-0.2
-0.2
-0.6
control
PDB
-0.2
-0.4
+0.1
-0.1
-0.5
plant
Atlantic
-0.4
-0.2
+0.0
-0.0
-0.2
plant
Upstate
-0.1
-0.4
-0.1
-0.1
-0.1
control
LB
-0.2
-0.3
-0.1
-0.1
-0.0
plant
Atlantic
-0.1
+0.1
-0.4
-0.2
-0.1
plant
Upstate
-0.1
-0.2
-0.2
+0.0
-0.2
control
PDB
-0.1
-0.2
+0.2
-0.1
-0.3
plant
Norland
-0.1
-0.1
-0.4
+0.0
+0.0
control
PDB
+0.2
-0.0
+0.2
-0.2
-0.8
carbon source
M9+polygalacturonate
-0.2
-0.2
-0.3
+0.0
+0.1
carbon source
M9+polygalacturonate
-0.3
-0.6
-0.1
+0.1
+0.3
carbon source
M9+glycerol
+0.1
-0.2
-0.4
+0.2
-0.0
plant
Norland
+0.1
-0.2
-0.5
-0.0
+0.3
carbon source
M9+sucrose
-0.1
-0.5
+0.3
+0.0
-0.0
carbon source
M9+glycerol
-0.0
-0.1
-0.4
+0.2
+0.1
plant
Norland
+0.1
-0.4
+0.1
-0.1
+0.3
carbon source
M9+sucrose
+0.2
-0.5
-0.0
+0.2
+0.1
control
LB
+0.2
-0.0
-0.3
-0.0
+0.2
plant
Upstate
-0.0
-0.3
-0.1
+0.2
+0.3
plant
Norland
+0.1
-0.3
+0.1
+0.1
+0.1
carbon source
M9+sucrose
-0.0
-0.5
+0.4
+0.1
+0.1
carbon source
M9+glycerol
-0.0
+0.3
-0.3
+0.1
+0.1
plant
Atlantic
-0.2
+0.1
+0.1
+0.0
+0.4
carbon source
M9+glycerol
+0.2
-0.0
-0.1
+0.3
+0.2
plant
Atlantic
-0.2
+0.1
+0.5
+0.1
+0.8
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