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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS09175 and HGI48_RS09180 are separated by 185 nucleotides
HGI48_RS09180 and HGI48_RS09185 are separated by 230 nucleotides
HGI48_RS09185 and HGI48_RS09190 are separated by 157 nucleotides
HGI48_RS09190 and HGI48_RS09195 overlap by 1 nucleotides
HGI48_RS09175: HGI48_RS09175 - response regulator transcription factor, at 1,968,992 to 1,969,726
_RS09175
HGI48_RS09180: HGI48_RS09180 - OFA family MFS transporter, at 1,969,912 to 1,971,129
_RS09180
HGI48_RS09185: HGI48_RS09185 - 50S ribosomal protein L25, at 1,971,360 to 1,971,647
_RS09185
HGI48_RS09190: HGI48_RS09190 - DEAD/DEAH box helicase, at 1,971,805 to 1,973,580
_RS09190
HGI48_RS09195: HGI48_RS09195 - DUF2492 family protein, at 1,973,580 to 1,973,819
_RS09195
Group
Condition
HGI48
_RS09175
HGI48
_RS09180
HGI48
_RS09185
HGI48
_RS09190
HGI48
_RS09195
carbon source
M9+polygalacturonate
-0.1
-0.1
N.D.
-0.4
-0.3
plant
Atlantic
+0.0
-0.3
N.D.
-0.7
-0.0
carbon source
M9+sucrose
-0.0
-0.2
N.D.
-0.1
-0.6
plant
Upstate
+0.0
-0.0
N.D.
-0.5
-0.1
carbon source
M9+sucrose
-0.1
+0.4
N.D.
-0.3
-0.5
control
PDB
+0.0
-0.2
N.D.
-0.1
-0.1
plant
Atlantic
-0.0
+0.1
N.D.
-0.8
+0.4
carbon source
M9+sucrose
-0.2
+0.1
N.D.
-0.0
-0.2
plant
Norland
-0.0
+0.1
N.D.
-0.3
-0.1
plant
Upstate
-0.0
+0.1
N.D.
-0.2
-0.1
plant
Atlantic
+0.2
-0.2
N.D.
-0.2
-0.0
plant
Upstate
-0.0
-0.1
N.D.
-0.2
+0.1
control
PDB
-0.2
-0.3
N.D.
+0.1
+0.3
control
PDB
-0.0
-0.3
N.D.
+0.0
+0.3
control
LB
+0.2
+0.1
N.D.
-0.2
-0.1
carbon source
M9+glycerol
+0.1
+0.1
N.D.
-0.1
-0.1
plant
Norland
+0.2
-0.0
N.D.
-0.3
+0.2
plant
Norland
+0.2
+0.2
N.D.
-0.2
-0.1
control
LB
+0.1
+0.1
N.D.
-0.2
+0.1
carbon source
M9+polygalacturonate
-0.1
+0.3
N.D.
+0.1
-0.1
control
PDB
-0.0
-0.1
N.D.
+0.0
+0.4
carbon source
M9+glycerol
+0.0
+0.2
N.D.
+0.1
-0.1
carbon source
M9+glycerol
+0.1
+0.1
N.D.
-0.2
+0.2
carbon source
M9+polygalacturonate
+0.4
+0.1
N.D.
-0.1
+0.0
carbon source
M9+glycerol
+0.2
+0.2
N.D.
+0.2
-0.3
plant
Upstate
+0.3
+0.2
N.D.
-0.1
+0.1
plant
Upstate
+0.4
+0.2
N.D.
+0.1
-0.2
carbon source
M9+glycerol
+0.0
+0.3
N.D.
+0.2
-0.0
carbon source
M9+glycerol
+0.3
+0.2
N.D.
+0.1
+0.0
plant
Atlantic
+0.2
+0.5
N.D.
+0.0
+0.1
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