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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS09165 and HGI48_RS09170 are separated by 144 nucleotides
HGI48_RS09170 and HGI48_RS09175 are separated by 25 nucleotides
HGI48_RS09175 and HGI48_RS09180 are separated by 185 nucleotides
HGI48_RS09180 and HGI48_RS09185 are separated by 230 nucleotides
HGI48_RS09165: HGI48_RS09165 - nucleoid-associated protein YejK, at 1,966,111 to 1,967,121
_RS09165
HGI48_RS09170: HGI48_RS09170 - sensor histidine kinase, at 1,967,266 to 1,968,966
_RS09170
HGI48_RS09175: HGI48_RS09175 - response regulator transcription factor, at 1,968,992 to 1,969,726
_RS09175
HGI48_RS09180: HGI48_RS09180 - OFA family MFS transporter, at 1,969,912 to 1,971,129
_RS09180
HGI48_RS09185: HGI48_RS09185 - 50S ribosomal protein L25, at 1,971,360 to 1,971,647
_RS09185
Group
Condition
HGI48
_RS09165
HGI48
_RS09170
HGI48
_RS09175
HGI48
_RS09180
HGI48
_RS09185
plant
Atlantic
-0.3
-0.4
+0.0
-0.3
N.D.
control
PDB
-0.0
-0.3
-0.0
-0.3
N.D.
control
PDB
-0.0
-0.1
-0.2
-0.3
N.D.
control
PDB
+0.1
-0.2
-0.2
+0.0
N.D.
plant
Norland
+0.2
-0.2
+0.1
-0.1
N.D.
plant
Atlantic
+0.4
-0.4
+0.2
-0.2
N.D.
control
LB
+0.3
-0.2
-0.1
+0.0
N.D.
plant
Norland
+0.3
-0.2
+0.1
-0.0
N.D.
plant
Norland
+0.1
-0.2
+0.2
+0.2
N.D.
carbon source
M9+glycerol
+0.2
-0.2
+0.0
+0.3
N.D.
control
LB
+0.3
-0.2
+0.1
+0.1
N.D.
plant
Norland
+0.4
-0.1
-0.0
+0.1
N.D.
carbon source
M9+glycerol
+0.2
-0.1
+0.0
+0.2
N.D.
carbon source
M9+glycerol
+0.5
-0.3
+0.1
+0.1
N.D.
plant
Norland
+0.4
-0.2
-0.0
+0.2
N.D.
control
PDB
+0.2
+0.0
+0.0
+0.2
N.D.
plant
Atlantic
+0.4
+0.0
-0.0
+0.1
N.D.
plant
Atlantic
+0.2
+0.3
+0.1
-0.0
N.D.
control
LB
+0.5
-0.1
+0.2
+0.1
N.D.
carbon source
M9+glycerol
+0.2
-0.1
+0.3
+0.2
N.D.
carbon source
M9+glycerol
+0.4
-0.0
+0.2
+0.2
N.D.
plant
Upstate
+0.2
+0.0
+0.4
+0.2
N.D.
plant
Atlantic
+0.4
-0.2
+0.2
+0.5
N.D.
carbon source
M9+sucrose
+1.1
-0.0
-0.0
-0.2
N.D.
plant
Upstate
+0.4
+0.1
+0.3
+0.2
N.D.
carbon source
M9+polygalacturonate
+1.3
-0.0
-0.1
-0.1
N.D.
carbon source
M9+polygalacturonate
+0.9
+0.1
-0.1
+0.3
N.D.
carbon source
M9+sucrose
+1.5
-0.0
-0.2
+0.1
N.D.
carbon source
M9+polygalacturonate
+1.1
+0.1
+0.4
+0.1
N.D.
carbon source
M9+sucrose
+1.4
-0.1
-0.1
+0.4
N.D.
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