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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS09005 and HGI48_RS09010 are separated by 142 nucleotides
HGI48_RS09010 and HGI48_RS09015 are separated by 5 nucleotides
HGI48_RS09015 and HGI48_RS09020 are separated by 7 nucleotides
HGI48_RS09020 and HGI48_RS09025 overlap by 11 nucleotides
HGI48_RS09005: HGI48_RS09005 - ABC transporter substrate-binding protein, at 1,939,002 to 1,940,561
_RS09005
HGI48_RS09010: HGI48_RS09010 - ABC transporter permease, at 1,940,704 to 1,941,711
_RS09010
HGI48_RS09015: HGI48_RS09015 - ABC transporter permease, at 1,941,717 to 1,942,562
_RS09015
HGI48_RS09020: HGI48_RS09020 - ABC transporter ATP-binding protein, at 1,942,570 to 1,943,559
_RS09020
HGI48_RS09025: HGI48_RS09025 - ABC transporter ATP-binding protein, at 1,943,549 to 1,944,511
_RS09025
Group
Condition
HGI48
_RS09005
HGI48
_RS09010
HGI48
_RS09015
HGI48
_RS09020
HGI48
_RS09025
carbon source
M9+sucrose
+0.1
+0.0
-0.3
-0.2
-0.0
plant
Norland
-0.1
-0.1
+0.1
-0.0
-0.2
carbon source
M9+sucrose
+0.1
-0.0
-0.0
-0.4
+0.1
plant
Norland
-0.1
-0.2
+0.0
-0.1
+0.1
plant
Upstate
-0.2
+0.0
-0.1
+0.3
-0.3
plant
Atlantic
+0.0
-0.3
+0.2
-0.3
+0.2
plant
Norland
+0.0
-0.0
+0.0
-0.3
+0.2
plant
Norland
-0.1
-0.2
+0.2
+0.3
-0.3
plant
Upstate
-0.2
-0.1
+0.0
+0.1
+0.2
control
LB
-0.1
-0.1
-0.0
+0.1
+0.1
control
LB
-0.1
-0.2
+0.1
-0.1
+0.3
carbon source
M9+glycerol
+0.1
-0.1
-0.0
+0.1
-0.1
plant
Atlantic
+0.1
-0.1
+0.3
-0.2
-0.1
carbon source
M9+glycerol
-0.1
+0.0
-0.1
+0.3
-0.0
plant
Atlantic
+0.0
-0.0
-0.1
-0.1
+0.3
plant
Upstate
-0.0
+0.2
-0.1
+0.1
-0.1
carbon source
M9+glycerol
-0.0
-0.1
-0.1
+0.3
-0.0
carbon source
M9+glycerol
+0.0
-0.1
-0.3
+0.4
+0.1
control
PDB
-0.1
-0.2
+0.1
+0.2
+0.1
control
LB
-0.0
-0.1
+0.1
+0.3
-0.0
control
PDB
-0.1
+0.0
+0.2
-0.0
+0.2
carbon source
M9+polygalacturonate
+0.0
+0.1
+0.1
+0.3
-0.2
control
PDB
-0.0
+0.1
-0.0
+0.3
-0.1
plant
Atlantic
+0.0
+0.1
+0.2
+0.1
-0.1
carbon source
M9+glycerol
-0.0
+0.2
+0.2
+0.1
+0.1
plant
Atlantic
-0.1
+0.2
+0.0
+0.4
-0.1
control
PDB
+0.1
+0.1
-0.1
+0.3
+0.1
carbon source
M9+polygalacturonate
+0.0
+0.4
+0.2
-0.1
+0.1
plant
Norland
-0.1
+0.2
+0.2
+0.5
-0.0
plant
Upstate
+0.0
-0.1
-0.1
+0.5
+0.2
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