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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS08805 and HGI48_RS08810 are separated by 181 nucleotides
HGI48_RS08810 and HGI48_RS08815 are separated by 749 nucleotides
HGI48_RS08815 and HGI48_RS08820 are separated by 185 nucleotides
HGI48_RS08820 and HGI48_RS08825 are separated by 18 nucleotides
HGI48_RS08805: HGI48_RS08805 - ABC transporter substrate-binding protein, at 1,894,165 to 1,895,757
_RS08805
HGI48_RS08810: HGI48_RS08810 - tRNA dihydrouridine(16) synthase DusC, at 1,895,939 to 1,896,874
_RS08810
HGI48_RS08815: HGI48_RS08815 - class IV adenylate cyclase, at 1,897,624 to 1,898,163
_RS08815
HGI48_RS08820: HGI48_RS08820 - D-alanyl-D-alanine endopeptidase, at 1,898,349 to 1,899,302
_RS08820
HGI48_RS08825: HGI48_RS08825 - glutathione S-transferase family protein, at 1,899,321 to 1,900,007
_RS08825
Group
Condition
HGI48
_RS08805
HGI48
_RS08810
HGI48
_RS08815
HGI48
_RS08820
HGI48
_RS08825
plant
Atlantic
-0.2
-0.0
-0.7
-0.0
-0.1
plant
Atlantic
-0.6
+0.4
-0.1
+0.2
-0.5
plant
Upstate
+0.0
+0.2
-0.0
-0.3
-0.5
control
LB
+0.1
+0.1
-0.1
-0.4
-0.2
plant
Norland
+0.2
+0.2
-0.1
-0.4
-0.3
plant
Norland
-0.1
+0.2
+0.1
-0.3
-0.4
control
PDB
-0.2
+0.2
-0.4
+0.2
-0.2
plant
Norland
+0.4
+0.4
-0.0
-0.6
-0.5
plant
Norland
-0.1
+0.2
-0.1
-0.2
-0.1
plant
Atlantic
-0.2
+0.2
+0.2
-0.2
-0.3
plant
Upstate
-0.0
+0.3
-0.0
+0.1
-0.5
carbon source
M9+glycerol
-0.1
+0.4
+0.0
-0.1
-0.2
plant
Norland
-0.0
+0.6
-0.4
-0.0
-0.1
carbon source
M9+sucrose
+0.0
-0.0
+0.4
+0.0
-0.3
carbon source
M9+glycerol
-0.2
+0.2
-0.1
+0.2
-0.0
plant
Atlantic
+0.2
+0.4
-0.2
-0.1
-0.1
carbon source
M9+glycerol
-0.1
+0.4
-0.2
-0.1
+0.2
control
LB
+0.2
+0.4
+0.0
-0.3
-0.0
plant
Upstate
-0.1
+0.6
+0.1
-0.1
-0.1
control
PDB
-0.3
+0.3
-0.1
+0.4
+0.1
plant
Atlantic
-0.2
+0.4
-0.1
+0.2
+0.1
plant
Upstate
+0.2
+0.4
-0.2
-0.0
+0.1
carbon source
M9+sucrose
+0.0
+0.1
+0.3
+0.2
-0.2
carbon source
M9+sucrose
-0.1
+0.4
+0.2
+0.0
+0.1
control
PDB
-0.0
+0.3
-0.2
+0.5
-0.0
carbon source
M9+glycerol
-0.0
+0.5
+0.3
+0.1
-0.1
plant
Norland
+0.2
+0.5
+0.0
+0.3
-0.3
control
PDB
-0.1
+0.2
+0.1
+0.5
+0.1
carbon source
M9+polygalacturonate
+0.1
+0.4
-0.1
+0.6
-0.1
plant
Atlantic
+0.4
+0.3
+0.5
+0.2
-0.3
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