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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS08765 and HGI48_RS08770 are separated by 64 nucleotides
HGI48_RS08770 and HGI48_RS08775 overlap by 17 nucleotides
HGI48_RS08775 and HGI48_RS08780 overlap by 11 nucleotides
HGI48_RS08780 and HGI48_RS08785 are separated by 449 nucleotides
HGI48_RS08765: HGI48_RS08765 - ABC transporter permease, at 1,883,957 to 1,885,063
_RS08765
HGI48_RS08770: HGI48_RS08770 - ABC transporter permease, at 1,885,128 to 1,886,273
_RS08770
HGI48_RS08775: HGI48_RS08775 - ABC transporter ATP-binding protein, at 1,886,257 to 1,888,008
_RS08775
HGI48_RS08780: HGI48_RS08780 - secretion protein HlyD, at 1,887,998 to 1,889,002
_RS08780
HGI48_RS08785: HGI48_RS08785 - ATP-dependent RNA helicase RhlE, at 1,889,452 to 1,890,810
_RS08785
Group
Condition
HGI48
_RS08765
HGI48
_RS08770
HGI48
_RS08775
HGI48
_RS08780
HGI48
_RS08785
plant
Atlantic
-0.3
-0.2
-0.9
-0.9
+0.3
carbon source
M9+glycerol
-0.3
-0.4
-1.2
-0.1
+0.1
carbon source
M9+glycerol
-0.3
-0.2
-0.9
-0.0
-0.2
carbon source
M9+glycerol
-0.2
-0.3
-0.7
-0.1
-0.4
plant
Atlantic
-0.4
-0.0
-0.5
-0.5
-0.2
plant
Atlantic
-1.0
-0.3
+0.3
-0.6
+0.0
carbon source
M9+polygalacturonate
-0.1
-0.1
-0.6
+0.5
-1.2
carbon source
M9+sucrose
-0.0
-0.0
-0.6
-0.2
-0.7
carbon source
M9+polygalacturonate
-0.2
-0.1
-0.1
+0.1
-1.0
plant
Norland
+0.1
-0.4
-0.5
-0.5
+0.0
plant
Upstate
-0.2
-0.3
-0.9
+0.0
-0.0
carbon source
M9+glycerol
-0.5
-0.2
-0.1
-0.8
+0.2
plant
Atlantic
-0.6
-0.1
-0.4
-0.1
+0.0
plant
Norland
-0.3
-0.2
-0.5
-0.0
+0.0
plant
Atlantic
-0.3
-0.3
+0.1
-0.7
+0.2
plant
Norland
-0.6
-0.3
-0.0
+0.1
-0.0
control
LB
-0.4
-0.3
+0.1
-0.2
-0.1
control
PDB
-0.1
-0.1
+0.4
-0.5
-0.4
plant
Upstate
-0.3
+0.1
+0.0
-0.7
+0.2
plant
Upstate
-0.1
+0.0
-0.2
-0.6
+0.1
control
PDB
-0.3
+0.1
-0.1
+0.0
-0.4
control
PDB
+0.1
+0.1
-0.6
+0.0
-0.3
plant
Norland
-0.1
-0.3
-0.2
-0.3
+0.3
carbon source
M9+sucrose
-0.3
+0.2
+0.0
+0.4
-0.8
plant
Upstate
-0.3
-0.0
+0.3
-0.6
+0.1
carbon source
M9+glycerol
-0.4
-0.1
+0.3
-0.3
-0.0
carbon source
M9+polygalacturonate
+0.0
+0.0
-0.1
+0.5
-0.8
plant
Upstate
-0.3
-0.2
-0.1
+0.2
+0.4
control
PDB
+0.2
+0.1
+0.7
-0.2
-0.4
carbon source
M9+sucrose
+0.1
+0.4
+0.6
+0.6
-1.1
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