Fitness for 5 genes in Dickeya dianthicola 67-19

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500 ntHGI48_RS08335 and HGI48_RS08340 overlap by 20 nucleotidesHGI48_RS08340 and HGI48_RS08345 overlap by 4 nucleotidesHGI48_RS08345 and HGI48_RS08350 are separated by 125 nucleotidesHGI48_RS08350 and HGI48_RS08355 are separated by 77 nucleotides HGI48_RS08335: HGI48_RS08335 - DNA phosphorothioation-dependent restriction protein DptG, at 1,787,669 to 1,788,994 _RS08335 HGI48_RS08340: HGI48_RS08340 - DNA phosphorothioation-dependent restriction protein DptH, at 1,788,975 to 1,794,056 _RS08340 HGI48_RS08345: HGI48_RS08345 - restriction endonuclease, at 1,794,053 to 1,794,874 _RS08345 HGI48_RS08350: HGI48_RS08350 - class I SAM-dependent methyltransferase, at 1,795,000 to 1,795,431 _RS08350 HGI48_RS08355: HGI48_RS08355 - IS481 family transposase, at 1,795,509 to 1,796,550 _RS08355
Group Condition HGI48_RS08335 HGI48_RS08340 HGI48_RS08345 HGI48_RS08350 HGI48_RS08355
control PDB -0.0 -0.1 -1.1 -0.4 -1.5
control PDB -0.3 -0.0 -0.7 -0.1 -1.3
control PDB +0.2 -0.0 -1.0 -0.6 -0.7
carbon source M9+sucrose +0.1 -0.1 -0.3 -0.2 -1.5
plant Upstate -0.4 +0.2 -0.3 +0.2 -1.7
carbon source M9+polygalacturonate -0.2 -0.0 -0.7 -0.4 -0.7
carbon source M9+polygalacturonate +0.0 -0.1 -0.6 -0.7 -0.5
control PDB -0.3 -0.1 -0.9 -0.2 -0.3
plant Atlantic -0.7 +0.2 +0.6 +0.0 -1.9
control PDB -0.4 -0.0 -0.1 -0.0 -1.2
carbon source M9+polygalacturonate +0.2 -0.1 -0.8 -0.3 -0.6
plant Atlantic -0.2 +0.0 +0.2 +0.4 -2.0
plant Upstate -0.5 +0.1 -0.1 +0.3 -1.3
carbon source M9+glycerol -0.6 +0.1 -0.4 +0.3 -0.8
plant Atlantic -0.9 +0.2 -0.1 +0.1 -0.5
plant Norland -0.3 -0.0 -0.2 +0.3 -0.8
plant Norland +0.2 -0.0 -0.5 +0.5 -0.9
control PDB -0.4 -0.1 -0.4 -0.2 +0.4
plant Atlantic +0.7 +0.2 -0.8 +0.3 -1.0
plant Norland -0.2 -0.0 -0.3 +0.3 -0.4
carbon source M9+glycerol -0.5 +0.0 +0.2 +0.4 -0.6
carbon source M9+glycerol -0.1 -0.1 +0.4 +0.4 -1.1
plant Norland +0.3 +0.2 +0.1 +0.2 -1.0
control LB -0.2 +0.1 -0.0 +0.6 -0.8
carbon source M9+glycerol -0.4 -0.2 +0.3 +0.9 -0.9
carbon source M9+sucrose +0.2 +0.1 +0.4 -0.2 -0.5
carbon source M9+glycerol -0.2 +0.1 -0.1 +0.6 -0.4
carbon source M9+glycerol -0.5 +0.2 +0.3 +0.5 +0.1
plant Atlantic +0.6 -0.0 -0.3 +0.3 +0.8
plant Norland -0.1 +0.2 +0.6 +0.4 +0.4
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