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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS08175 and HGI48_RS08180 are separated by 35 nucleotides
HGI48_RS08180 and HGI48_RS08185 are separated by 417 nucleotides
HGI48_RS08185 and HGI48_RS08190 are separated by 54 nucleotides
HGI48_RS08190 and HGI48_RS08195 are separated by 130 nucleotides
HGI48_RS08175: HGI48_RS08175 - AraC family transcriptional regulator, at 1,755,764 to 1,756,666
_RS08175
HGI48_RS08180: HGI48_RS08180 - LysR family transcriptional regulator, at 1,756,702 to 1,757,682
_RS08180
HGI48_RS08185: HGI48_RS08185 - NAD(P)H-dependent oxidoreductase, at 1,758,100 to 1,758,624
_RS08185
HGI48_RS08190: HGI48_RS08190 - NAD(P)H-dependent oxidoreductase, at 1,758,679 to 1,759,290
_RS08190
HGI48_RS08195: HGI48_RS08195 - LysR family transcriptional regulator, at 1,759,421 to 1,760,320
_RS08195
Group
Condition
HGI48
_RS08175
HGI48
_RS08180
HGI48
_RS08185
HGI48
_RS08190
HGI48
_RS08195
control
PDB
-0.3
-0.3
-0.5
-0.3
-0.3
control
PDB
-0.3
-0.3
-0.2
-0.4
-0.2
control
PDB
-0.1
-0.3
-0.7
-0.1
-0.3
control
PDB
-0.2
-0.3
-0.4
-0.3
-0.1
control
PDB
-0.3
-0.2
-0.6
+0.1
-0.3
plant
Atlantic
-0.1
-0.2
-0.1
-0.5
-0.1
carbon source
M9+sucrose
-0.1
-0.2
-0.3
-0.2
-0.3
plant
Norland
-0.3
-0.2
-0.4
-0.0
-0.0
control
LB
+0.0
-0.2
-0.4
-0.1
-0.3
plant
Norland
-0.2
-0.5
-0.1
-0.2
+0.1
carbon source
M9+sucrose
-0.2
-0.3
-0.2
+0.1
-0.3
carbon source
M9+glycerol
-0.1
-0.3
-0.2
-0.2
-0.0
control
PDB
-0.1
-0.4
-0.4
-0.2
+0.3
carbon source
M9+glycerol
+0.1
-0.2
-0.3
-0.5
+0.1
control
LB
-0.0
-0.4
-0.3
-0.1
+0.0
plant
Norland
-0.0
-0.3
-0.1
+0.1
-0.3
plant
Upstate
+0.0
-0.3
+0.1
-0.5
+0.0
plant
Upstate
+0.1
-0.2
-0.3
-0.3
+0.1
plant
Upstate
+0.1
-0.3
-0.4
+0.2
-0.1
carbon source
M9+glycerol
-0.3
-0.2
-0.4
+0.3
+0.1
control
LB
-0.2
-0.2
-0.3
+0.1
+0.1
plant
Atlantic
+0.1
+0.1
-0.5
+0.0
-0.1
plant
Norland
-0.1
-0.4
-0.2
+0.3
-0.0
carbon source
M9+glycerol
+0.0
-0.0
-0.2
+0.3
-0.3
plant
Norland
+0.3
-0.1
-0.5
-0.0
+0.0
plant
Atlantic
+0.0
+0.3
-0.5
-0.1
+0.3
plant
Atlantic
-0.2
+0.0
-0.2
+0.3
+0.1
carbon source
M9+polygalacturonate
+0.3
-0.2
+0.1
+0.4
-0.3
carbon source
M9+polygalacturonate
+0.1
+0.0
-0.3
+0.8
-0.2
carbon source
M9+glycerol
+0.1
+0.0
-0.0
+0.5
+0.3
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