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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS08135 and HGI48_RS08140 are separated by 92 nucleotides
HGI48_RS08140 and HGI48_RS08145 are separated by 205 nucleotides
HGI48_RS08145 and HGI48_RS08150 are separated by 142 nucleotides
HGI48_RS08150 and HGI48_RS08155 are separated by 380 nucleotides
HGI48_RS08135: HGI48_RS08135 - DHA2 family efflux MFS transporter permease subunit, at 1,747,981 to 1,749,507
_RS08135
HGI48_RS08140: HGI48_RS08140 - helix-turn-helix domain-containing protein, at 1,749,600 to 1,750,499
_RS08140
HGI48_RS08145: HGI48_RS08145 - DUF2501 domain-containing protein, at 1,750,705 to 1,751,190
_RS08145
HGI48_RS08150: HGI48_RS08150 - flavin reductase family protein, at 1,751,333 to 1,751,923
_RS08150
HGI48_RS08155: HGI48_RS08155 - DUF1971 domain-containing protein, at 1,752,304 to 1,752,636
_RS08155
Group
Condition
HGI48
_RS08135
HGI48
_RS08140
HGI48
_RS08145
HGI48
_RS08150
HGI48
_RS08155
carbon source
M9+polygalacturonate
+0.1
+0.1
-0.2
-1.0
+0.2
carbon source
M9+sucrose
-0.3
+0.3
-0.3
-0.1
-0.5
plant
Atlantic
+0.5
+0.5
-0.3
-1.0
-0.4
carbon source
M9+polygalacturonate
+0.1
-0.2
-0.1
+0.4
-0.9
carbon source
M9+glycerol
+0.4
+0.1
+0.0
-0.5
-0.5
carbon source
M9+sucrose
-0.2
+0.1
+0.5
-0.7
-0.1
carbon source
M9+sucrose
+0.1
+0.0
+0.1
-0.1
-0.4
plant
Norland
+0.0
+0.0
+0.2
+0.0
-0.5
plant
Atlantic
+0.1
-0.0
+0.1
-0.6
+0.2
carbon source
M9+glycerol
+0.3
+0.1
+0.3
-0.6
-0.3
carbon source
M9+glycerol
+0.2
+0.1
+0.0
-0.7
+0.4
plant
Atlantic
-0.3
+0.6
+0.4
-0.1
-0.5
carbon source
M9+glycerol
+0.0
+0.2
-0.4
+0.3
+0.0
plant
Upstate
-0.2
+0.0
+0.3
+0.1
-0.1
control
LB
+0.4
-0.0
+0.2
+0.1
-0.4
carbon source
M9+glycerol
+0.3
-0.0
+0.3
+0.3
-0.4
plant
Upstate
+0.2
+0.2
+0.1
+0.3
-0.2
plant
Norland
+0.1
+0.3
+0.3
+0.1
-0.3
plant
Norland
+0.1
+0.1
+0.3
+0.3
-0.2
plant
Norland
-0.1
+0.1
+0.2
+0.4
+0.2
plant
Atlantic
+0.0
-0.1
+0.2
+0.4
+0.3
carbon source
M9+glycerol
+0.2
+0.1
+0.3
+0.4
-0.1
control
PDB
+1.3
+0.4
-0.0
-0.2
-0.3
plant
Atlantic
+0.1
+0.3
+0.2
+0.7
-0.0
plant
Upstate
+0.3
+0.2
+0.4
+0.3
+0.0
control
PDB
+1.1
+0.5
-0.1
-0.4
+0.4
control
PDB
+1.8
+0.7
+0.1
-0.5
-0.5
control
PDB
+1.7
+0.6
+0.0
-0.2
-0.3
control
PDB
+1.7
+0.6
+0.1
-0.1
-0.1
control
PDB
+1.6
+0.6
-0.1
+0.3
+0.1
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