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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS08120 and HGI48_RS08125 are separated by 166 nucleotides
HGI48_RS08125 and HGI48_RS08130 are separated by 16 nucleotides
HGI48_RS08130 and HGI48_RS08135 are separated by 10 nucleotides
HGI48_RS08135 and HGI48_RS08140 are separated by 92 nucleotides
HGI48_RS08120: HGI48_RS08120 - ABC transporter ATP-binding protein, at 1,745,380 to 1,746,141
_RS08120
HGI48_RS08125: HGI48_RS08125 - MarR family transcriptional regulator, at 1,746,308 to 1,746,775
_RS08125
HGI48_RS08130: HGI48_RS08130 - efflux RND transporter periplasmic adaptor subunit, at 1,746,792 to 1,747,970
_RS08130
HGI48_RS08135: HGI48_RS08135 - DHA2 family efflux MFS transporter permease subunit, at 1,747,981 to 1,749,507
_RS08135
HGI48_RS08140: HGI48_RS08140 - helix-turn-helix domain-containing protein, at 1,749,600 to 1,750,499
_RS08140
Group
Condition
HGI48
_RS08120
HGI48
_RS08125
HGI48
_RS08130
HGI48
_RS08135
HGI48
_RS08140
plant
Atlantic
-0.6
-0.8
+0.2
-0.3
+0.6
plant
Upstate
-0.0
-0.7
-0.2
-0.1
+0.1
plant
Atlantic
-0.1
-0.5
-0.1
+0.1
-0.0
plant
Atlantic
-0.3
-0.3
-0.0
+0.1
+0.3
carbon source
M9+polygalacturonate
-0.4
+0.3
+0.0
+0.0
-0.1
plant
Upstate
-0.2
-0.2
-0.0
+0.3
+0.0
carbon source
M9+glycerol
-0.4
-0.0
+0.1
+0.3
-0.0
carbon source
M9+polygalacturonate
-0.3
+0.3
+0.2
+0.1
-0.2
plant
Upstate
-0.2
+0.3
-0.4
+0.2
+0.2
plant
Norland
-0.2
-0.4
+0.3
+0.1
+0.3
plant
Norland
-0.4
+0.6
+0.0
-0.1
+0.1
carbon source
M9+glycerol
-0.1
-0.3
+0.0
+0.4
+0.1
plant
Norland
-0.3
+0.4
-0.2
+0.0
+0.2
control
LB
-0.2
+0.2
-0.2
+0.4
-0.0
carbon source
M9+glycerol
-0.3
+0.3
+0.0
+0.2
+0.1
carbon source
M9+sucrose
+0.0
+0.2
+0.0
-0.3
+0.3
plant
Norland
-0.1
+0.4
-0.1
+0.1
+0.1
plant
Upstate
-0.0
-0.1
-0.1
+0.3
+0.2
carbon source
M9+glycerol
-0.2
+0.5
-0.1
+0.3
+0.1
carbon source
M9+glycerol
+0.1
+0.3
-0.1
+0.2
+0.1
control
LB
-0.1
+0.5
+0.0
+0.2
+0.2
plant
Atlantic
-0.0
+0.3
-0.1
+0.5
+0.5
plant
Norland
-0.0
+1.0
-0.0
+0.1
+0.1
plant
Atlantic
+0.4
+0.3
+0.3
+0.3
+0.1
control
PDB
-0.0
+0.4
+1.4
+1.3
+0.4
control
PDB
-0.5
+1.4
+1.4
+1.1
+0.5
control
PDB
-0.3
+0.5
+1.5
+1.6
+0.6
control
PDB
-0.1
+0.9
+1.3
+1.7
+0.6
control
PDB
-0.4
+0.8
+1.8
+1.8
+0.7
control
PDB
-0.0
+1.1
+1.5
+1.7
+0.6
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