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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS07930 and HGI48_RS07935 are separated by 32 nucleotides
HGI48_RS07935 and HGI48_RS07940 are separated by 354 nucleotides
HGI48_RS07940 and HGI48_RS07945 are separated by 969 nucleotides
HGI48_RS07945 and HGI48_RS07950 are separated by 31 nucleotides
HGI48_RS07930: HGI48_RS07930 - efflux transporter outer membrane subunit, at 1,697,263 to 1,698,744
_RS07930
HGI48_RS07935: HGI48_RS07935 - MATE family efflux transporter, at 1,698,777 to 1,700,186
_RS07935
HGI48_RS07940: HGI48_RS07940 - amidohydrolase, at 1,700,541 to 1,701,698
_RS07940
HGI48_RS07945: HGI48_RS07945 - type VI secretion system contractile sheath small subunit, at 1,702,668 to 1,703,171
_RS07945
HGI48_RS07950: HGI48_RS07950 - type VI secretion system contractile sheath large subunit, at 1,703,203 to 1,704,681
_RS07950
Group
Condition
HGI48
_RS07930
HGI48
_RS07935
HGI48
_RS07940
HGI48
_RS07945
HGI48
_RS07950
plant
Norland
+0.0
-0.1
-0.1
-0.4
-0.0
carbon source
M9+polygalacturonate
-0.1
-0.3
-0.0
-0.3
+0.0
plant
Atlantic
-0.1
+0.2
-0.4
-0.1
-0.2
carbon source
M9+polygalacturonate
-0.1
+0.0
-0.3
-0.1
+0.2
carbon source
M9+glycerol
+0.2
-0.1
-0.1
-0.2
-0.0
carbon source
M9+sucrose
-0.2
+0.1
-0.0
-0.2
+0.1
control
LB
-0.1
-0.0
-0.2
+0.3
-0.0
plant
Upstate
+0.1
-0.1
-0.1
-0.1
+0.1
carbon source
M9+glycerol
+0.1
-0.0
-0.2
+0.1
+0.1
plant
Norland
-0.2
-0.2
+0.1
+0.2
+0.1
control
LB
-0.1
-0.1
-0.0
+0.2
+0.2
plant
Atlantic
+0.0
-0.2
-0.1
+0.4
+0.0
control
PDB
+0.0
-0.1
+0.0
-0.2
+0.4
control
PDB
+0.1
-0.3
-0.1
+0.2
+0.3
plant
Atlantic
+0.1
-0.3
-0.0
+0.3
+0.2
carbon source
M9+sucrose
-0.0
+0.2
+0.1
-0.1
+0.2
control
PDB
-0.2
-0.2
+0.1
+0.2
+0.3
control
PDB
-0.1
-0.2
-0.1
+0.5
+0.3
plant
Norland
-0.0
-0.2
+0.1
+0.3
+0.3
carbon source
M9+glycerol
+0.1
+0.2
-0.1
+0.2
+0.1
plant
Atlantic
+0.1
-0.1
-0.1
+0.3
+0.3
carbon source
M9+polygalacturonate
-0.1
+0.0
-0.0
+0.2
+0.5
plant
Norland
+0.1
-0.1
+0.1
+0.0
+0.4
carbon source
M9+sucrose
+0.0
+0.2
+0.1
+0.2
+0.1
plant
Atlantic
+0.2
-0.0
+0.1
+0.0
+0.6
control
PDB
+0.1
-0.3
+0.2
+0.2
+0.5
plant
Norland
+0.1
+0.0
-0.1
+0.4
+0.4
plant
Upstate
+0.2
+0.2
+0.1
+0.3
+0.2
plant
Norland
-0.1
+0.1
+0.1
+0.8
+0.2
control
PDB
+0.2
-0.1
-0.0
+0.7
+0.4
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