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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS07765 and HGI48_RS07770 are separated by 243 nucleotides
HGI48_RS07770 and HGI48_RS07775 are separated by 196 nucleotides
HGI48_RS07775 and HGI48_RS07780 are separated by 165 nucleotides
HGI48_RS07780 and HGI48_RS07785 are separated by 351 nucleotides
HGI48_RS07765: HGI48_RS07765 - LysR family transcriptional regulator, at 1,661,182 to 1,662,108
_RS07765
HGI48_RS07770: HGI48_RS07770 - CDP-diacylglycerol diphosphatase, at 1,662,352 to 1,663,116
_RS07770
HGI48_RS07775: HGI48_RS07775 - LysR family transcriptional regulator, at 1,663,313 to 1,664,212
_RS07775
HGI48_RS07780: HGI48_RS07780 - ABC transporter substrate-binding protein, at 1,664,378 to 1,665,916
_RS07780
HGI48_RS07785: HGI48_RS07785 - nucleoside hydrolase, at 1,666,268 to 1,667,221
_RS07785
Group
Condition
HGI48
_RS07765
HGI48
_RS07770
HGI48
_RS07775
HGI48
_RS07780
HGI48
_RS07785
carbon source
M9+sucrose
-0.2
-0.1
-0.9
+0.1
-0.3
carbon source
M9+polygalacturonate
-0.6
-0.0
-0.4
+0.0
-0.2
plant
Upstate
-0.3
-0.2
-0.4
-0.1
+0.2
carbon source
M9+sucrose
-0.1
-0.2
-0.3
+0.4
-0.5
control
LB
-0.2
-0.1
-0.6
+0.0
+0.3
carbon source
M9+glycerol
-0.3
+0.1
-0.9
+0.5
+0.2
plant
Atlantic
-0.4
+0.2
-0.8
+0.3
+0.4
plant
Norland
+0.2
-0.2
-0.3
+0.1
+0.1
plant
Atlantic
-0.5
-0.1
-0.2
+0.3
+0.3
carbon source
M9+sucrose
-0.0
+0.0
+0.1
+0.3
-0.4
control
PDB
-0.1
+0.0
-0.5
+0.8
-0.0
plant
Atlantic
+0.2
+0.2
-1.3
+1.0
+0.1
control
LB
+0.1
-0.2
+0.0
+0.2
+0.3
control
LB
+0.5
+0.0
-0.3
+0.2
+0.1
control
PDB
+0.2
-0.2
-0.2
+0.9
-0.2
control
PDB
+0.2
-0.2
-0.0
+0.8
-0.2
plant
Norland
+0.2
-0.2
+0.2
+0.4
+0.1
plant
Norland
+0.1
-0.0
+0.4
+0.3
+0.2
carbon source
M9+glycerol
-0.1
-0.2
+0.2
+0.6
+0.4
plant
Atlantic
+0.2
-0.3
+0.3
+0.6
+0.2
control
PDB
+0.1
-0.1
+0.2
+0.9
-0.2
control
PDB
+0.1
-0.1
+0.4
+0.8
-0.1
control
PDB
+0.0
-0.1
+0.5
+0.9
-0.1
carbon source
M9+polygalacturonate
-0.1
+0.0
+0.5
+0.7
+0.2
plant
Norland
+0.1
+0.1
+0.5
+0.4
+0.2
plant
Upstate
+0.3
-0.0
+0.3
+0.3
+0.5
carbon source
M9+glycerol
-0.0
-0.2
+0.3
+1.1
+0.5
carbon source
M9+glycerol
+0.2
-0.2
-0.1
+1.3
+0.6
carbon source
M9+glycerol
+0.5
-0.2
+0.3
+1.3
+0.6
carbon source
M9+glycerol
+0.4
+0.1
+0.2
+1.3
+0.5
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