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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS07695 and HGI48_RS07700 are separated by 10 nucleotides
HGI48_RS07700 and HGI48_RS07705 are separated by 64 nucleotides
HGI48_RS07705 and HGI48_RS07710 overlap by 14 nucleotides
HGI48_RS07710 and HGI48_RS07715 are separated by 162 nucleotides
HGI48_RS07695: HGI48_RS07695 - TonB-dependent receptor, at 1,642,911 to 1,645,232
_RS07695
HGI48_RS07700: HGI48_RS07700 - Tat pathway signal sequence domain protein, at 1,645,243 to 1,648,023
_RS07700
HGI48_RS07705: HGI48_RS07705 - hypothetical protein, at 1,648,088 to 1,648,786
_RS07705
HGI48_RS07710: HGI48_RS07710 - LysR family transcriptional regulator, at 1,648,773 to 1,649,714
_RS07710
HGI48_RS07715: HGI48_RS07715 - DUF2076 domain-containing protein, at 1,649,877 to 1,650,653
_RS07715
Group
Condition
HGI48
_RS07695
HGI48
_RS07700
HGI48
_RS07705
HGI48
_RS07710
HGI48
_RS07715
control
PDB
-0.1
+0.0
-0.0
-0.1
-0.9
plant
Atlantic
-0.1
-0.2
+0.2
-0.8
-0.0
control
PDB
-0.1
-0.1
+0.2
-0.5
-0.5
plant
Norland
+0.0
-0.1
-0.0
-0.6
-0.1
control
PDB
-0.1
-0.0
+0.1
-0.3
-0.5
plant
Upstate
-0.3
-0.0
+0.2
-0.1
-0.4
carbon source
M9+glycerol
-0.0
-0.0
-0.2
-0.5
+0.1
plant
Atlantic
+0.2
+0.0
-0.2
+0.0
-0.6
carbon source
M9+polygalacturonate
-0.1
-0.0
+0.1
-0.3
-0.2
control
PDB
-0.0
-0.0
+0.1
+0.1
-0.7
plant
Upstate
-0.2
-0.1
+0.2
-0.3
-0.2
carbon source
M9+polygalacturonate
+0.1
+0.2
+0.2
-0.6
-0.2
control
PDB
+0.0
-0.1
+0.1
+0.2
-0.6
plant
Upstate
+0.2
-0.1
-0.0
-0.3
-0.1
control
PDB
+0.1
+0.2
+0.2
-0.2
-0.4
control
LB
-0.1
-0.1
+0.3
-0.2
-0.0
plant
Norland
-0.1
+0.0
+0.2
-0.3
+0.0
plant
Atlantic
+0.0
-0.1
+0.5
-0.4
+0.0
carbon source
M9+glycerol
+0.1
-0.2
+0.2
+0.1
-0.2
plant
Norland
+0.1
-0.1
+0.2
-0.1
-0.2
plant
Atlantic
+0.3
-0.2
+0.1
+0.1
-0.2
plant
Norland
-0.2
+0.1
+0.1
+0.2
-0.1
carbon source
M9+glycerol
-0.1
-0.0
+0.2
-0.3
+0.3
carbon source
M9+sucrose
-0.1
+0.1
-0.1
+0.4
-0.1
control
LB
-0.0
+0.1
+0.1
+0.3
-0.2
carbon source
M9+glycerol
-0.2
-0.1
+0.1
+0.5
+0.1
carbon source
M9+polygalacturonate
+0.4
+0.0
+0.1
+0.2
-0.2
plant
Norland
-0.0
-0.0
+0.2
+0.5
-0.1
carbon source
M9+sucrose
+0.3
-0.0
-0.2
+0.7
-0.3
plant
Norland
+0.2
-0.1
-0.0
+0.5
-0.1
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