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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS07440 and HGI48_RS07445 are separated by 387 nucleotides
HGI48_RS07445 and HGI48_RS07450 are separated by 0 nucleotides
HGI48_RS07450 and HGI48_RS07455 overlap by 4 nucleotides
HGI48_RS07455 and HGI48_RS07460 overlap by 1 nucleotides
HGI48_RS07440: HGI48_RS07440 - hypothetical protein, at 1,585,877 to 1,586,443
_RS07440
HGI48_RS07445: HGI48_RS07445 - phosphonate metabolism transcriptional regulator PhnF, at 1,586,831 to 1,587,550
_RS07445
HGI48_RS07450: HGI48_RS07450 - phosphonate C-P lyase system protein PhnG, at 1,587,551 to 1,588,000
_RS07450
HGI48_RS07455: HGI48_RS07455 - phosphonate C-P lyase system protein PhnH, at 1,587,997 to 1,588,572
_RS07455
HGI48_RS07460: HGI48_RS07460 - carbon-phosphorus lyase complex subunit PhnI, at 1,588,572 to 1,589,663
_RS07460
Group
Condition
HGI48
_RS07440
HGI48
_RS07445
HGI48
_RS07450
HGI48
_RS07455
HGI48
_RS07460
carbon source
M9+polygalacturonate
-0.5
-0.1
-0.4
N.D.
-0.3
carbon source
M9+polygalacturonate
-0.2
-0.2
-0.5
N.D.
-0.2
carbon source
M9+polygalacturonate
-0.4
+0.1
-0.3
N.D.
-0.3
control
LB
-0.0
-0.4
-0.0
N.D.
-0.4
carbon source
M9+glycerol
-0.0
-0.5
-0.2
N.D.
-0.1
plant
Atlantic
+0.3
-0.6
-0.0
N.D.
-0.3
control
LB
-0.0
-0.0
-0.4
N.D.
-0.1
plant
Atlantic
-0.0
-0.0
-0.2
N.D.
-0.2
plant
Upstate
-0.2
+0.0
-0.2
N.D.
-0.2
plant
Upstate
+0.1
-0.2
-0.2
N.D.
-0.1
plant
Atlantic
-0.3
+0.2
-0.4
N.D.
+0.0
plant
Norland
+0.2
-0.1
-0.3
N.D.
-0.1
plant
Norland
+0.1
-0.3
-0.3
N.D.
+0.2
plant
Norland
+0.0
+0.2
-0.1
N.D.
-0.3
carbon source
M9+glycerol
+0.2
-0.0
-0.2
N.D.
-0.2
carbon source
M9+glycerol
-0.3
+0.1
-0.0
N.D.
+0.1
plant
Upstate
-0.1
+0.2
+0.1
N.D.
-0.2
carbon source
M9+glycerol
-0.3
+0.1
+0.3
N.D.
-0.1
carbon source
M9+sucrose
-0.3
+0.1
+0.1
N.D.
+0.2
carbon source
M9+sucrose
-0.5
-0.0
+0.4
N.D.
+0.2
control
PDB
-0.3
+0.2
+0.3
N.D.
-0.0
plant
Upstate
+0.3
+0.2
-0.1
N.D.
-0.2
plant
Atlantic
-0.2
+0.9
-0.1
N.D.
-0.3
control
PDB
-0.2
+0.4
+0.2
N.D.
+0.1
control
PDB
-0.2
+0.4
+0.0
N.D.
+0.2
control
PDB
+0.0
+0.6
-0.1
N.D.
-0.1
control
PDB
-0.1
+0.6
-0.2
N.D.
+0.2
plant
Norland
+0.3
+0.3
-0.0
N.D.
-0.1
plant
Atlantic
-0.1
+0.6
-0.2
N.D.
+0.2
carbon source
M9+sucrose
+0.1
+0.1
+0.2
N.D.
+0.2
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