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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS07300 and HGI48_RS07305 overlap by 8 nucleotides
HGI48_RS07305 and HGI48_RS07310 overlap by 4 nucleotides
HGI48_RS07310 and HGI48_RS07315 overlap by 4 nucleotides
HGI48_RS07315 and HGI48_RS07320 are separated by 10 nucleotides
HGI48_RS07300: HGI48_RS07300 - hydrogenase maturation peptidase HycI, at 1,553,972 to 1,554,469
_RS07300
HGI48_RS07305: HGI48_RS07305 - formate hydrogenlyase maturation HycH family protein, at 1,554,462 to 1,554,860
_RS07305
HGI48_RS07310: HGI48_RS07310 - NADH-quinone oxidoreductase subunit B family protein, at 1,554,857 to 1,555,648
_RS07310
HGI48_RS07315: HGI48_RS07315 - hydrogenase 4 subunit H, at 1,555,645 to 1,556,214
_RS07315
HGI48_RS07320: HGI48_RS07320 - hydrogenase large subunit, at 1,556,225 to 1,557,952
_RS07320
Group
Condition
HGI48
_RS07300
HGI48
_RS07305
HGI48
_RS07310
HGI48
_RS07315
HGI48
_RS07320
carbon source
M9+glycerol
-0.6
-0.1
-0.0
-0.4
-0.1
control
PDB
-1.3
+0.1
+0.0
+0.1
+0.1
plant
Atlantic
-1.1
+0.2
+0.2
-0.1
-0.1
plant
Upstate
-0.2
+0.0
-0.4
-0.1
+0.0
plant
Norland
-0.5
+0.1
+0.0
-0.2
-0.0
carbon source
M9+polygalacturonate
+0.0
-0.2
-0.0
-0.2
-0.2
plant
Upstate
-0.2
-0.3
+0.2
-0.2
-0.0
plant
Atlantic
-0.2
+0.1
+0.1
-0.2
-0.2
plant
Upstate
-0.3
-0.1
+0.2
-0.1
-0.1
control
LB
-0.3
+0.0
+0.1
-0.2
-0.1
plant
Upstate
-0.4
-0.0
+0.1
+0.1
-0.2
control
PDB
-0.4
+0.1
+0.3
-0.0
-0.1
plant
Atlantic
+0.3
-0.1
+0.0
-0.4
+0.2
plant
Norland
-0.2
+0.1
+0.4
-0.3
-0.1
control
PDB
-0.4
+0.2
+0.0
+0.2
+0.2
carbon source
M9+glycerol
+0.6
-0.1
-0.1
-0.1
-0.1
plant
Norland
-0.2
+0.2
+0.1
-0.1
+0.2
plant
Norland
+0.4
-0.2
-0.0
+0.1
+0.0
carbon source
M9+polygalacturonate
+0.4
-0.1
+0.1
+0.0
-0.1
carbon source
M9+glycerol
+0.3
+0.1
+0.3
-0.1
-0.1
carbon source
M9+sucrose
+0.4
-0.2
+0.1
+0.3
-0.0
plant
Upstate
+0.3
+0.1
+0.1
+0.0
-0.1
control
LB
+0.3
+0.2
+0.0
+0.2
-0.1
carbon source
M9+polygalacturonate
+0.4
-0.0
-0.1
+0.3
+0.0
plant
Norland
+0.4
-0.1
+0.3
+0.1
+0.0
carbon source
M9+glycerol
+0.3
+0.1
+0.3
-0.0
+0.1
carbon source
M9+sucrose
+0.3
+0.2
-0.0
+0.6
-0.2
carbon source
M9+sucrose
+0.5
+0.2
-0.0
+0.1
+0.1
plant
Atlantic
+1.2
-0.1
+0.2
+0.8
-0.6
plant
Atlantic
+0.4
+0.7
+0.2
+0.2
+0.0
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