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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS07250 and HGI48_RS07255 are separated by 151 nucleotides
HGI48_RS07255 and HGI48_RS07260 are separated by 70 nucleotides
HGI48_RS07260 and HGI48_RS07265 are separated by 911 nucleotides
HGI48_RS07265 and HGI48_RS07270 are separated by 142 nucleotides
HGI48_RS07250: HGI48_RS07250 - aspartate/glutamate racemase family protein, at 1,540,971 to 1,541,687
_RS07250
HGI48_RS07255: HGI48_RS07255 - hypochlorite stress DNA-binding transcriptional regulator HypT, at 1,541,839 to 1,542,732
_RS07255
HGI48_RS07260: HGI48_RS07260 - dicarboxylate/amino acid:cation symporter, at 1,542,803 to 1,544,092
_RS07260
HGI48_RS07265: HGI48_RS07265 - formate hydrogenlyase transcriptional activator FlhA, at 1,545,004 to 1,547,181
_RS07265
HGI48_RS07270: HGI48_RS07270 - AAA family ATPase, at 1,547,324 to 1,548,340
_RS07270
Group
Condition
HGI48
_RS07250
HGI48
_RS07255
HGI48
_RS07260
HGI48
_RS07265
HGI48
_RS07270
carbon source
M9+glycerol
-0.1
-0.0
-0.2
-0.4
N.D.
carbon source
M9+glycerol
-0.3
-0.2
+0.1
-0.2
N.D.
plant
Norland
-0.4
-0.2
-0.2
+0.1
N.D.
control
PDB
-0.3
-0.0
-0.1
-0.1
N.D.
plant
Norland
-0.2
-0.2
-0.1
+0.0
N.D.
control
PDB
-0.2
-0.1
+0.0
-0.2
N.D.
plant
Atlantic
+0.1
-0.1
-0.2
-0.2
N.D.
carbon source
M9+glycerol
-0.2
+0.1
-0.3
+0.1
N.D.
plant
Upstate
+0.0
+0.1
-0.3
-0.2
N.D.
plant
Norland
-0.2
-0.4
+0.3
-0.1
N.D.
carbon source
M9+glycerol
-0.3
+0.1
-0.1
-0.0
N.D.
carbon source
M9+glycerol
-0.3
+0.1
+0.1
-0.2
N.D.
carbon source
M9+glycerol
-0.2
+0.0
+0.1
-0.1
N.D.
carbon source
M9+polygalacturonate
+0.1
-0.4
-0.0
+0.1
N.D.
plant
Upstate
-0.2
+0.2
+0.1
-0.2
N.D.
control
PDB
-0.3
+0.0
+0.2
-0.0
N.D.
plant
Atlantic
+0.1
+0.2
-0.3
-0.1
N.D.
control
PDB
-0.2
-0.1
+0.2
+0.0
N.D.
plant
Upstate
+0.0
+0.2
-0.3
+0.1
N.D.
plant
Atlantic
-0.0
+0.5
-0.0
-0.2
N.D.
plant
Norland
+0.0
-0.1
+0.2
+0.1
N.D.
control
PDB
+0.0
+0.3
+0.1
-0.2
N.D.
plant
Atlantic
-0.1
+0.5
-0.1
+0.0
N.D.
plant
Atlantic
+0.1
-0.1
+0.3
+0.1
N.D.
plant
Upstate
-0.1
+0.3
+0.1
+0.2
N.D.
carbon source
M9+sucrose
+0.1
+0.3
+0.2
-0.1
N.D.
plant
Upstate
+0.2
+0.4
+0.0
-0.1
N.D.
carbon source
M9+polygalacturonate
-0.1
+0.2
-0.0
+0.5
N.D.
carbon source
M9+polygalacturonate
+0.0
+0.4
+0.1
+0.1
N.D.
plant
Atlantic
-0.2
+0.4
+0.3
+0.3
N.D.
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