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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS06940 and HGI48_RS06945 are separated by 382 nucleotides
HGI48_RS06945 and HGI48_RS06950 are separated by 173 nucleotides
HGI48_RS06950 and HGI48_RS06955 are separated by 313 nucleotides
HGI48_RS06955 and HGI48_RS06960 are separated by 154 nucleotides
HGI48_RS06940: HGI48_RS06940 - galactonate dehydratase, at 1,472,144 to 1,473,292
_RS06940
HGI48_RS06945: HGI48_RS06945 - MFS transporter, at 1,473,675 to 1,474,964
_RS06945
HGI48_RS06950: HGI48_RS06950 - oxidoreductase, at 1,475,138 to 1,476,028
_RS06950
HGI48_RS06955: HGI48_RS06955 - LysR family transcriptional regulator, at 1,476,342 to 1,477,235
_RS06955
HGI48_RS06960: HGI48_RS06960 - NADH-dependent flavin oxidoreductase, at 1,477,390 to 1,478,541
_RS06960
Group
Condition
HGI48
_RS06940
HGI48
_RS06945
HGI48
_RS06950
HGI48
_RS06955
HGI48
_RS06960
control
PDB
-0.3
-0.2
-0.3
-0.1
-0.1
carbon source
M9+polygalacturonate
+0.2
+0.1
-0.2
-0.9
+0.1
control
PDB
-0.1
-0.1
-0.0
-0.4
-0.0
plant
Atlantic
+0.1
+0.1
-0.3
-0.6
+0.1
carbon source
M9+sucrose
-0.2
+0.1
-0.0
-0.2
+0.0
plant
Atlantic
+0.2
-0.3
+0.2
+0.1
-0.2
carbon source
M9+polygalacturonate
+0.1
+0.1
-0.0
-0.3
+0.2
plant
Atlantic
+0.3
-0.2
-0.0
+0.1
-0.1
plant
Norland
-0.0
-0.0
+0.0
+0.3
-0.2
control
PDB
+0.3
-0.3
+0.2
-0.2
+0.2
plant
Atlantic
-0.1
+0.1
+0.5
-0.2
-0.1
carbon source
M9+glycerol
-0.1
+0.1
-0.1
+0.4
-0.2
control
LB
+0.0
-0.1
-0.1
+0.3
+0.1
plant
Upstate
+0.1
-0.1
-0.1
-0.1
+0.3
plant
Atlantic
+0.2
-0.1
+0.2
+0.1
-0.1
plant
Upstate
+0.1
+0.1
-0.2
+0.2
+0.1
plant
Upstate
-0.1
+0.1
+0.0
+0.2
+0.2
plant
Atlantic
+0.2
-0.2
+0.3
+0.0
+0.1
plant
Norland
+0.2
+0.2
-0.2
+0.4
-0.0
plant
Upstate
+0.1
+0.1
-0.2
+0.3
+0.1
carbon source
M9+glycerol
-0.0
+0.1
-0.0
+0.5
-0.0
carbon source
M9+sucrose
+0.1
+0.3
-0.3
+0.1
+0.3
carbon source
M9+glycerol
+0.0
-0.1
+0.1
+0.4
+0.1
carbon source
M9+glycerol
-0.1
-0.0
+0.1
+0.5
+0.1
carbon source
M9+sucrose
+0.1
+0.2
+0.0
-0.1
+0.3
carbon source
M9+glycerol
+0.0
+0.1
+0.0
+0.3
+0.2
plant
Norland
+0.2
-0.1
+0.1
+0.2
+0.1
control
LB
+0.1
+0.0
+0.1
+0.3
+0.0
carbon source
M9+polygalacturonate
+0.2
+0.0
+0.1
+0.3
+0.0
plant
Norland
+0.3
-0.1
+0.2
+0.4
+0.1
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