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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS06825 and HGI48_RS06830 are separated by 83 nucleotides
HGI48_RS06830 and HGI48_RS06835 are separated by 191 nucleotides
HGI48_RS06835 and HGI48_RS06840 are separated by 185 nucleotides
HGI48_RS06840 and HGI48_RS06845 are separated by 505 nucleotides
HGI48_RS06825: HGI48_RS06825 - nucleotide sugar dehydrogenase, at 1,446,817 to 1,447,983
_RS06825
HGI48_RS06830: HGI48_RS06830 - GalU regulator GalF, at 1,448,067 to 1,448,963
_RS06830
HGI48_RS06835: HGI48_RS06835 - glycosyltransferase, at 1,449,155 to 1,450,144
_RS06835
HGI48_RS06840: HGI48_RS06840 - NADP-dependent phosphogluconate dehydrogenase, at 1,450,330 to 1,451,736
_RS06840
HGI48_RS06845: HGI48_RS06845 - hypothetical protein, at 1,452,242 to 1,452,508
_RS06845
Group
Condition
HGI48
_RS06825
HGI48
_RS06830
HGI48
_RS06835
HGI48
_RS06840
HGI48
_RS06845
plant
Norland
N.D.
-0.4
-0.4
-0.8
-0.4
plant
Upstate
N.D.
-0.7
-0.2
-0.5
-0.3
plant
Atlantic
N.D.
+0.0
+0.2
-1.3
-0.2
plant
Atlantic
N.D.
-0.4
+0.2
-0.8
-0.3
carbon source
M9+sucrose
N.D.
-0.1
-0.1
-0.6
-0.5
plant
Atlantic
N.D.
+0.1
-0.1
-0.8
-0.4
carbon source
M9+sucrose
N.D.
+0.1
-0.3
-0.6
-0.4
plant
Upstate
N.D.
-0.3
+0.1
-0.4
-0.5
plant
Norland
N.D.
-0.3
+0.1
-0.5
-0.2
control
LB
N.D.
+0.1
-0.2
-0.5
-0.3
control
PDB
N.D.
-1.1
-0.4
+0.7
+0.0
carbon source
M9+glycerol
N.D.
+0.2
-0.3
+0.3
-0.9
plant
Atlantic
N.D.
-0.5
+0.1
-0.3
+0.0
plant
Norland
N.D.
-0.0
+0.2
-0.5
-0.2
plant
Atlantic
N.D.
-0.0
-0.6
+0.1
+0.0
carbon source
M9+glycerol
N.D.
-0.6
+0.2
+0.2
-0.2
plant
Norland
N.D.
-0.2
+0.0
-0.4
+0.2
carbon source
M9+polygalacturonate
N.D.
+0.5
-0.1
-0.7
+0.1
control
PDB
N.D.
-0.8
-0.0
+0.3
+0.3
plant
Atlantic
N.D.
+0.5
+0.0
-0.7
-0.1
control
PDB
N.D.
-0.8
-0.5
+0.7
+0.3
carbon source
M9+polygalacturonate
N.D.
+0.7
-0.3
-0.4
-0.1
carbon source
M9+glycerol
N.D.
+0.4
-0.5
-0.1
+0.1
carbon source
M9+polygalacturonate
N.D.
+0.8
-0.4
-0.4
+0.2
plant
Norland
N.D.
-0.2
+0.1
+0.5
-0.2
control
PDB
N.D.
-1.3
+0.1
+0.8
+0.7
plant
Norland
N.D.
-0.1
+0.6
-0.3
+0.1
control
PDB
N.D.
-0.9
-0.2
+1.3
+0.0
carbon source
M9+glycerol
N.D.
+0.1
+0.2
+0.4
-0.2
control
PDB
N.D.
-0.8
+0.1
+0.9
+0.2
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