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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS06460 and HGI48_RS06465 overlap by 7 nucleotides
HGI48_RS06465 and HGI48_RS06470 overlap by 11 nucleotides
HGI48_RS06470 and HGI48_RS06475 are separated by 221 nucleotides
HGI48_RS06475 and HGI48_RS06480 are separated by 655 nucleotides
HGI48_RS06460: HGI48_RS06460 - 5-oxoprolinase subunit PxpB, at 1,370,008 to 1,370,667
_RS06460
HGI48_RS06465: HGI48_RS06465 - biotin-dependent carboxyltransferase family protein, at 1,370,661 to 1,371,590
_RS06465
HGI48_RS06470: HGI48_RS06470 - 5-oxoprolinase subunit PxpA, at 1,371,580 to 1,372,317
_RS06470
HGI48_RS06475: HGI48_RS06475 - citrate synthase, at 1,372,539 to 1,373,825
_RS06475
HGI48_RS06480: HGI48_RS06480 - succinate dehydrogenase cytochrome b556 subunit, at 1,374,481 to 1,374,870
_RS06480
Group
Condition
HGI48
_RS06460
HGI48
_RS06465
HGI48
_RS06470
HGI48
_RS06475
HGI48
_RS06480
carbon source
M9+glycerol
-0.4
+0.2
+0.1
-2.7
-0.6
plant
Norland
-0.2
-0.3
+0.2
-2.2
-0.8
carbon source
M9+polygalacturonate
-0.3
+0.7
-0.2
-1.2
-2.3
carbon source
M9+polygalacturonate
-0.1
+0.1
-0.1
-1.4
-1.7
carbon source
M9+glycerol
-0.2
+0.0
+0.2
-3.4
+0.5
carbon source
M9+polygalacturonate
+0.1
-0.5
-0.2
-1.1
-1.2
plant
Upstate
-0.1
+0.2
-0.0
-2.2
-0.6
control
LB
-0.1
-0.0
-0.3
-1.4
-0.8
control
LB
-0.3
-0.0
-0.1
-1.0
-1.0
carbon source
M9+glycerol
-0.2
-0.2
-0.0
-1.9
+0.1
control
LB
-0.2
+0.1
-0.1
-1.0
-1.1
plant
Norland
+0.2
-0.1
+0.4
-1.7
-1.0
plant
Norland
-0.6
-0.1
+0.2
-1.1
-0.6
plant
Upstate
-0.4
+0.1
+0.3
-1.6
-0.4
carbon source
M9+sucrose
-0.0
+0.3
-0.9
-2.3
+1.0
plant
Upstate
-0.2
+0.4
+0.0
-1.2
-0.6
plant
Atlantic
-0.3
-0.1
+0.4
-0.8
-0.7
plant
Norland
-0.1
+0.2
+0.3
-1.0
-1.0
carbon source
M9+glycerol
+0.2
-0.1
+0.3
-2.4
+0.6
carbon source
M9+glycerol
+0.1
-0.2
-0.1
-1.5
+0.4
plant
Atlantic
-0.2
+0.3
+0.1
-0.5
-1.1
plant
Norland
-0.1
+0.2
+0.4
-1.3
-0.3
carbon source
M9+sucrose
-0.2
+0.1
-0.5
-1.6
+1.5
control
PDB
-0.3
+0.4
+0.7
+0.5
-1.6
carbon source
M9+sucrose
-0.7
+0.2
-0.7
-0.7
+1.5
control
PDB
+0.1
+0.5
+0.8
+0.3
-1.7
control
PDB
-0.2
+0.0
+0.3
+0.8
-0.8
control
PDB
-0.1
+0.3
+0.6
+0.6
-1.1
control
PDB
+0.0
+0.3
+1.1
+0.3
-0.8
control
PDB
+0.2
+0.2
+0.8
+0.3
-0.5
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