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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS06445 and HGI48_RS06450 are separated by 28 nucleotides
HGI48_RS06450 and HGI48_RS06455 are separated by 48 nucleotides
HGI48_RS06455 and HGI48_RS06460 are separated by 69 nucleotides
HGI48_RS06460 and HGI48_RS06465 overlap by 7 nucleotides
HGI48_RS06445: HGI48_RS06445 - DUF1722 domain-containing protein, at 1,366,728 to 1,367,687
_RS06445
HGI48_RS06450: HGI48_RS06450 - deoxyribodipyrimidine photo-lyase, at 1,367,716 to 1,369,146
_RS06450
HGI48_RS06455: HGI48_RS06455 - type 2 GTP cyclohydrolase I, at 1,369,195 to 1,369,938
_RS06455
HGI48_RS06460: HGI48_RS06460 - 5-oxoprolinase subunit PxpB, at 1,370,008 to 1,370,667
_RS06460
HGI48_RS06465: HGI48_RS06465 - biotin-dependent carboxyltransferase family protein, at 1,370,661 to 1,371,590
_RS06465
Group
Condition
HGI48
_RS06445
HGI48
_RS06450
HGI48
_RS06455
HGI48
_RS06460
HGI48
_RS06465
plant
Atlantic
+0.6
+0.3
-2.9
-0.0
+0.2
control
LB
-0.1
+0.0
-1.6
-0.0
-0.1
carbon source
M9+glycerol
-0.0
-0.4
-0.3
-0.2
-0.2
plant
Norland
+0.0
-0.1
-1.1
+0.2
-0.1
plant
Atlantic
+0.1
-0.0
-1.2
-0.2
+0.3
plant
Atlantic
+0.3
-0.0
-1.2
-0.1
+0.1
plant
Atlantic
-0.8
+0.3
+0.1
-0.3
-0.1
plant
Norland
-0.6
+0.2
+0.1
-0.2
-0.3
plant
Upstate
-0.0
+0.3
-0.6
-0.4
+0.1
plant
Norland
-0.0
-0.0
+0.2
-0.6
-0.1
plant
Atlantic
-0.0
+0.2
-0.4
-0.0
-0.3
control
PDB
-0.3
-0.2
-0.0
-0.3
+0.4
plant
Upstate
-0.5
+0.2
-0.3
-0.2
+0.4
carbon source
M9+glycerol
-0.2
+0.3
-0.4
+0.2
-0.1
plant
Norland
+0.5
+0.1
-0.9
-0.1
+0.2
plant
Atlantic
+0.2
+0.4
+0.0
-0.2
-0.6
control
PDB
+0.0
+0.1
-0.8
+0.1
+0.5
plant
Norland
+0.3
-0.2
-0.2
-0.1
+0.2
carbon source
M9+polygalacturonate
-0.0
-0.3
+0.0
-0.3
+0.7
carbon source
M9+glycerol
+0.1
+0.3
+0.0
-0.4
+0.2
plant
Norland
+0.4
+0.1
-0.3
+0.1
+0.0
carbon source
M9+sucrose
+0.1
-0.2
+0.7
-0.2
+0.1
carbon source
M9+glycerol
+0.2
-0.3
+0.9
+0.1
-0.2
carbon source
M9+polygalacturonate
-0.1
+0.4
+0.9
+0.1
-0.5
control
PDB
+0.2
+0.1
+0.7
-0.2
+0.0
plant
Upstate
+0.3
+0.1
+0.4
-0.1
+0.2
control
PDB
-0.2
+0.2
+0.7
-0.1
+0.3
carbon source
M9+sucrose
-0.1
-0.1
+1.6
-0.7
+0.2
carbon source
M9+polygalacturonate
+0.3
+0.1
+0.8
-0.1
+0.1
carbon source
M9+sucrose
-0.1
+0.3
+2.3
-0.0
+0.3
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